Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24755 and PS417_24760 overlap by 4 nucleotides PS417_24760 and PS417_24765 are separated by 21 nucleotides PS417_24765 and PS417_24770 overlap by 4 nucleotides PS417_24770 and PS417_24775 are separated by 177 nucleotides
PS417_24755: PS417_24755 - phosphoesterase, at 5,370,076 to 5,371,392
_24755
PS417_24760: PS417_24760 - ATP-dependent protease, at 5,371,389 to 5,371,979
_24760
PS417_24765: PS417_24765 - membrane protein, at 5,372,001 to 5,372,717
_24765
PS417_24770: PS417_24770 - murein hydrolase transporter LrgA, at 5,372,714 to 5,373,067
_24770
PS417_24775: PS417_24775 - dehydratase, at 5,373,245 to 5,373,700
_24775
Position (kb) 5372
5373 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5371.382 kb on - strand at 5371.387 kb on + strand at 5371.387 kb on + strand at 5371.388 kb on - strand at 5371.388 kb on - strand at 5371.391 kb on - strand at 5371.391 kb on - strand at 5371.391 kb on - strand at 5371.507 kb on + strand, within PS417_24760 at 5371.980 kb on - strand at 5371.980 kb on - strand at 5372.003 kb on - strand at 5372.173 kb on - strand, within PS417_24765 at 5372.191 kb on + strand, within PS417_24765 at 5372.394 kb on + strand, within PS417_24765 at 5372.406 kb on - strand, within PS417_24765 at 5372.531 kb on - strand, within PS417_24765 at 5372.639 kb on - strand, within PS417_24765 at 5373.060 kb on - strand at 5373.060 kb on - strand at 5373.060 kb on - strand at 5373.060 kb on - strand at 5373.100 kb on + strand at 5373.100 kb on + strand at 5373.100 kb on + strand at 5373.100 kb on + strand at 5373.101 kb on - strand at 5373.101 kb on - strand at 5373.101 kb on - strand at 5373.101 kb on - strand at 5373.116 kb on - strand at 5373.175 kb on + strand at 5373.175 kb on + strand at 5373.176 kb on - strand at 5373.176 kb on - strand at 5373.190 kb on + strand at 5373.214 kb on + strand at 5373.214 kb on + strand at 5373.251 kb on + strand at 5373.252 kb on - strand at 5373.252 kb on - strand at 5373.255 kb on + strand at 5373.255 kb on + strand at 5373.255 kb on + strand at 5373.256 kb on - strand at 5373.256 kb on - strand at 5373.331 kb on + strand, within PS417_24775 at 5373.331 kb on + strand, within PS417_24775 at 5373.510 kb on - strand, within PS417_24775 at 5373.510 kb on - strand, within PS417_24775 at 5373.665 kb on + strand at 5373.665 kb on + strand at 5373.665 kb on + strand at 5373.665 kb on + strand at 5373.665 kb on + strand at 5373.666 kb on - strand at 5373.666 kb on - strand at 5373.666 kb on - strand at 5373.666 kb on - strand at 5373.689 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,371,382 - +1.0 5,371,387 + -0.8 5,371,387 + -0.8 5,371,388 - -1.8 5,371,388 - +2.5 5,371,391 - -0.7 5,371,391 - -0.3 5,371,391 - -0.6 5,371,507 + PS417_24760 0.20 -0.5 5,371,980 - -0.6 5,371,980 - -0.0 5,372,003 - +1.7 5,372,173 - PS417_24765 0.24 -2.2 5,372,191 + PS417_24765 0.26 -2.6 5,372,394 + PS417_24765 0.55 -0.0 5,372,406 - PS417_24765 0.56 +0.5 5,372,531 - PS417_24765 0.74 -1.2 5,372,639 - PS417_24765 0.89 -2.2 5,373,060 - -0.8 5,373,060 - +1.2 5,373,060 - -1.5 5,373,060 - +0.3 5,373,100 + -0.2 5,373,100 + +0.5 5,373,100 + +0.4 5,373,100 + -0.3 5,373,101 - +0.1 5,373,101 - +0.7 5,373,101 - -1.2 5,373,101 - +0.3 5,373,116 - -0.8 5,373,175 + +1.2 5,373,175 + -1.4 5,373,176 - -0.2 5,373,176 - +1.5 5,373,190 + -0.8 5,373,214 + +0.7 5,373,214 + +1.5 5,373,251 + +0.1 5,373,252 - +0.5 5,373,252 - -0.2 5,373,255 + +0.2 5,373,255 + +1.9 5,373,255 + -0.5 5,373,256 - +1.9 5,373,256 - -0.5 5,373,331 + PS417_24775 0.19 -0.2 5,373,331 + PS417_24775 0.19 +0.2 5,373,510 - PS417_24775 0.58 +0.1 5,373,510 - PS417_24775 0.58 -0.1 5,373,665 + -2.0 5,373,665 + +0.3 5,373,665 + +2.3 5,373,665 + -1.5 5,373,665 + -0.6 5,373,666 - -2.6 5,373,666 - -0.7 5,373,666 - -0.4 5,373,666 - -0.5 5,373,689 + +0.4
Or see this region's nucleotide sequence