Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23535 and PS417_23540 are separated by 101 nucleotides PS417_23540 and PS417_23545 are separated by 15 nucleotides PS417_23545 and PS417_23550 are separated by 109 nucleotides
PS417_23535: PS417_23535 - glutathione peroxidase, at 5,092,191 to 5,092,673
_23535
PS417_23540: PS417_23540 - CreA, at 5,092,775 to 5,093,239
_23540
PS417_23545: PS417_23545 - gamma-glutamyl kinase, at 5,093,255 to 5,094,373
_23545
PS417_23550: PS417_23550 - GTPase CgtA, at 5,094,483 to 5,095,706
_23550
Position (kb) 5093
5094
5095 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5092.519 kb on + strand, within PS417_23535 at 5092.519 kb on + strand, within PS417_23535 at 5092.520 kb on - strand, within PS417_23535 at 5092.520 kb on - strand, within PS417_23535 at 5092.520 kb on - strand at 5092.520 kb on - strand, within PS417_23535 at 5092.550 kb on - strand, within PS417_23535 at 5092.722 kb on + strand at 5092.722 kb on + strand at 5092.722 kb on + strand at 5092.745 kb on + strand at 5092.746 kb on - strand at 5092.854 kb on + strand, within PS417_23540 at 5092.854 kb on + strand, within PS417_23540 at 5092.855 kb on - strand, within PS417_23540 at 5092.855 kb on - strand, within PS417_23540 at 5092.857 kb on - strand, within PS417_23540 at 5092.857 kb on - strand, within PS417_23540 at 5093.076 kb on + strand, within PS417_23540 at 5093.076 kb on + strand, within PS417_23540 at 5093.077 kb on - strand, within PS417_23540 at 5093.245 kb on - strand at 5093.245 kb on - strand at 5093.304 kb on + strand at 5093.305 kb on - strand at 5093.305 kb on - strand at 5093.371 kb on - strand, within PS417_23545 at 5093.371 kb on - strand, within PS417_23545 at 5093.418 kb on - strand, within PS417_23545 at 5093.418 kb on - strand, within PS417_23545 at 5094.335 kb on + strand at 5094.386 kb on + strand at 5094.387 kb on - strand at 5094.387 kb on - strand at 5094.387 kb on - strand at 5094.496 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,092,519 + PS417_23535 0.68 -0.2 5,092,519 + PS417_23535 0.68 -0.0 5,092,520 - PS417_23535 0.68 -0.6 5,092,520 - PS417_23535 0.68 -0.1 5,092,520 - +1.0 5,092,520 - PS417_23535 0.68 +0.2 5,092,550 - PS417_23535 0.74 +0.9 5,092,722 + -0.3 5,092,722 + -1.0 5,092,722 + -0.2 5,092,745 + +0.2 5,092,746 - -1.9 5,092,854 + PS417_23540 0.17 +1.6 5,092,854 + PS417_23540 0.17 -0.2 5,092,855 - PS417_23540 0.17 -0.9 5,092,855 - PS417_23540 0.17 +0.0 5,092,857 - PS417_23540 0.18 +0.2 5,092,857 - PS417_23540 0.18 -0.2 5,093,076 + PS417_23540 0.65 -0.2 5,093,076 + PS417_23540 0.65 -1.6 5,093,077 - PS417_23540 0.65 -0.5 5,093,245 - -0.3 5,093,245 - -0.5 5,093,304 + -0.8 5,093,305 - -1.6 5,093,305 - +1.6 5,093,371 - PS417_23545 0.10 +0.6 5,093,371 - PS417_23545 0.10 -1.1 5,093,418 - PS417_23545 0.15 -0.8 5,093,418 - PS417_23545 0.15 -1.6 5,094,335 + -1.0 5,094,386 + -3.0 5,094,387 - -0.9 5,094,387 - -0.9 5,094,387 - -1.3 5,094,496 + -1.2
Or see this region's nucleotide sequence