Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23480 and PS417_23485 are separated by 216 nucleotides PS417_23485 and PS417_23490 are separated by 57 nucleotides PS417_23490 and PS417_23495 are separated by 20 nucleotides PS417_23495 and PS417_23500 are separated by 2 nucleotides PS417_23500 and PS417_23505 are separated by 23 nucleotides
PS417_23480: PS417_23480 - MerR family transcriptional regulator, at 5,083,348 to 5,084,298
_23480
PS417_23485: PS417_23485 - antibiotic biosynthesis monooxygenase, at 5,084,515 to 5,085,072
_23485
PS417_23490: PS417_23490 - dihydrofolate reductase, at 5,085,130 to 5,085,840
_23490
PS417_23495: PS417_23495 - GTP cyclohydrolase, at 5,085,861 to 5,086,415
_23495
PS417_23500: PS417_23500 - D-erythro-7,8-dihydroneopterin triphosphate epimerase, at 5,086,418 to 5,086,789
_23500
PS417_23505: PS417_23505 - cell division protein DedD, at 5,086,813 to 5,087,109
_23505
Position (kb) 5085
5086 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5084.286 kb on + strand at 5084.286 kb on + strand at 5084.287 kb on - strand at 5084.397 kb on - strand at 5084.415 kb on + strand at 5084.416 kb on - strand at 5084.476 kb on - strand at 5084.480 kb on - strand at 5084.509 kb on + strand at 5084.510 kb on - strand at 5084.520 kb on + strand at 5084.520 kb on + strand at 5084.521 kb on - strand at 5084.521 kb on - strand at 5084.796 kb on - strand, within PS417_23485 at 5084.796 kb on - strand, within PS417_23485 at 5084.796 kb on - strand at 5085.075 kb on - strand at 5085.096 kb on + strand at 5085.098 kb on + strand at 5085.099 kb on - strand at 5085.351 kb on + strand, within PS417_23490 at 5085.572 kb on - strand, within PS417_23490 at 5085.790 kb on + strand at 5085.790 kb on + strand at 5085.790 kb on + strand at 5085.790 kb on + strand at 5085.791 kb on - strand at 5085.831 kb on + strand at 5085.838 kb on + strand at 5085.838 kb on + strand at 5085.839 kb on - strand at 5085.860 kb on + strand at 5085.860 kb on + strand at 5085.860 kb on + strand at 5085.860 kb on + strand at 5085.860 kb on + strand at 5085.861 kb on - strand at 5085.861 kb on - strand at 5085.861 kb on - strand at 5086.068 kb on + strand, within PS417_23495 at 5086.069 kb on - strand, within PS417_23495 at 5086.122 kb on + strand, within PS417_23495 at 5086.122 kb on + strand, within PS417_23495 at 5086.123 kb on - strand, within PS417_23495 at 5086.123 kb on - strand, within PS417_23495 at 5086.123 kb on - strand, within PS417_23495 at 5086.179 kb on + strand, within PS417_23495 at 5086.179 kb on + strand, within PS417_23495 at 5086.179 kb on + strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.413 kb on + strand at 5086.413 kb on + strand at 5086.414 kb on - strand at 5086.414 kb on - strand at 5086.414 kb on - strand at 5086.478 kb on + strand at 5086.478 kb on + strand, within PS417_23500 at 5086.478 kb on + strand, within PS417_23500 at 5086.478 kb on + strand, within PS417_23500 at 5086.479 kb on - strand, within PS417_23500 at 5086.479 kb on - strand, within PS417_23500 at 5086.479 kb on - strand, within PS417_23500 at 5086.596 kb on - strand, within PS417_23500
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,084,286 + +1.3 5,084,286 + -0.0 5,084,287 - +2.1 5,084,397 - +0.1 5,084,415 + -0.6 5,084,416 - +1.3 5,084,476 - -1.2 5,084,480 - +0.4 5,084,509 + +0.4 5,084,510 - -1.1 5,084,520 + +0.9 5,084,520 + +0.9 5,084,521 - -0.4 5,084,521 - +0.2 5,084,796 - PS417_23485 0.50 -0.4 5,084,796 - PS417_23485 0.50 +0.4 5,084,796 - +1.6 5,085,075 - +0.2 5,085,096 + -1.9 5,085,098 + +0.8 5,085,099 - -0.4 5,085,351 + PS417_23490 0.31 +0.2 5,085,572 - PS417_23490 0.62 -1.2 5,085,790 + +1.8 5,085,790 + -0.2 5,085,790 + +0.6 5,085,790 + -0.0 5,085,791 - -0.0 5,085,831 + +0.3 5,085,838 + -0.0 5,085,838 + +0.6 5,085,839 - +0.2 5,085,860 + +0.2 5,085,860 + +0.9 5,085,860 + -0.5 5,085,860 + +0.4 5,085,860 + +0.6 5,085,861 - +0.6 5,085,861 - +0.3 5,085,861 - +1.6 5,086,068 + PS417_23495 0.37 -0.5 5,086,069 - PS417_23495 0.37 +1.6 5,086,122 + PS417_23495 0.47 +0.8 5,086,122 + PS417_23495 0.47 -0.0 5,086,123 - PS417_23495 0.47 -0.2 5,086,123 - PS417_23495 0.47 -0.5 5,086,123 - PS417_23495 0.47 +0.5 5,086,179 + PS417_23495 0.57 -0.3 5,086,179 + PS417_23495 0.57 +0.1 5,086,179 + PS417_23495 0.57 +0.2 5,086,180 - PS417_23495 0.57 -0.5 5,086,180 - PS417_23495 0.57 +1.2 5,086,180 - PS417_23495 0.57 +0.2 5,086,180 - PS417_23495 0.57 -0.6 5,086,413 + -0.5 5,086,413 + +0.8 5,086,414 - -0.5 5,086,414 - +0.3 5,086,414 - +0.6 5,086,478 + -0.0 5,086,478 + PS417_23500 0.16 -1.2 5,086,478 + PS417_23500 0.16 +0.4 5,086,478 + PS417_23500 0.16 +0.5 5,086,479 - PS417_23500 0.16 -0.1 5,086,479 - PS417_23500 0.16 -0.2 5,086,479 - PS417_23500 0.16 -0.6 5,086,596 - PS417_23500 0.48 -0.3
Or see this region's nucleotide sequence