Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06335 and PS417_06340 are separated by 54 nucleotides PS417_06340 and PS417_06345 overlap by 4 nucleotides PS417_06345 and PS417_06350 overlap by 13 nucleotides PS417_06350 and PS417_06355 overlap by 1 nucleotides
PS417_06335: PS417_06335 - S-formylglutathione hydrolase, at 1,407,220 to 1,408,065
_06335
PS417_06340: PS417_06340 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,408,120 to 1,408,593
_06340
PS417_06345: PS417_06345 - pseudouridine synthase, at 1,408,590 to 1,409,648
_06345
PS417_06350: PS417_06350 - stationary phase survival protein SurE, at 1,409,636 to 1,410,385
_06350
PS417_06355: PS417_06355 - protein-L-isoaspartate O-methyltransferase, at 1,410,385 to 1,411,062
_06355
Position (kb) 1408
1409
1410 Strain fitness (log2 ratio) -1
0
1
2
3 at 1407.592 kb on + strand, within PS417_06335 at 1407.592 kb on + strand at 1407.593 kb on - strand, within PS417_06335 at 1407.593 kb on - strand, within PS417_06335 at 1407.593 kb on - strand, within PS417_06335 at 1407.989 kb on - strand at 1408.000 kb on + strand at 1408.001 kb on - strand at 1408.001 kb on - strand at 1408.815 kb on + strand, within PS417_06345 at 1408.815 kb on + strand, within PS417_06345 at 1408.816 kb on - strand, within PS417_06345 at 1408.816 kb on - strand, within PS417_06345 at 1409.070 kb on + strand, within PS417_06345 at 1409.070 kb on + strand, within PS417_06345 at 1409.070 kb on + strand, within PS417_06345 at 1409.071 kb on - strand, within PS417_06345 at 1409.641 kb on + strand at 1409.693 kb on + strand at 1409.693 kb on + strand at 1409.694 kb on - strand at 1409.711 kb on + strand, within PS417_06350 at 1409.940 kb on - strand, within PS417_06350 at 1410.045 kb on - strand, within PS417_06350 at 1410.115 kb on + strand, within PS417_06350 at 1410.299 kb on + strand, within PS417_06350 at 1410.299 kb on + strand, within PS417_06350 at 1410.299 kb on + strand, within PS417_06350 at 1410.299 kb on + strand, within PS417_06350 at 1410.299 kb on + strand, within PS417_06350 at 1410.300 kb on - strand, within PS417_06350 at 1410.300 kb on - strand, within PS417_06350 at 1410.300 kb on - strand, within PS417_06350 at 1410.300 kb on - strand, within PS417_06350 at 1410.300 kb on - strand, within PS417_06350 at 1410.300 kb on - strand, within PS417_06350 at 1410.300 kb on - strand, within PS417_06350 at 1410.310 kb on + strand, within PS417_06350 at 1410.613 kb on + strand, within PS417_06355 at 1410.613 kb on + strand, within PS417_06355 at 1410.638 kb on + strand, within PS417_06355 at 1410.639 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 1,407,592 + PS417_06335 0.44 +0.1 1,407,592 + +1.5 1,407,593 - PS417_06335 0.44 -0.5 1,407,593 - PS417_06335 0.44 +0.2 1,407,593 - PS417_06335 0.44 +0.6 1,407,989 - -0.8 1,408,000 + +0.3 1,408,001 - -0.6 1,408,001 - -0.3 1,408,815 + PS417_06345 0.21 +1.1 1,408,815 + PS417_06345 0.21 +1.1 1,408,816 - PS417_06345 0.21 +1.2 1,408,816 - PS417_06345 0.21 +2.9 1,409,070 + PS417_06345 0.45 +0.3 1,409,070 + PS417_06345 0.45 -0.4 1,409,070 + PS417_06345 0.45 -0.5 1,409,071 - PS417_06345 0.45 +0.9 1,409,641 + -0.3 1,409,693 + +0.1 1,409,693 + -0.3 1,409,694 - -1.2 1,409,711 + PS417_06350 0.10 -0.5 1,409,940 - PS417_06350 0.41 -1.6 1,410,045 - PS417_06350 0.55 -0.7 1,410,115 + PS417_06350 0.64 -0.6 1,410,299 + PS417_06350 0.88 +0.2 1,410,299 + PS417_06350 0.88 -1.5 1,410,299 + PS417_06350 0.88 +0.3 1,410,299 + PS417_06350 0.88 +0.5 1,410,299 + PS417_06350 0.88 -0.2 1,410,300 - PS417_06350 0.89 -1.5 1,410,300 - PS417_06350 0.89 +0.2 1,410,300 - PS417_06350 0.89 +0.3 1,410,300 - PS417_06350 0.89 +1.0 1,410,300 - PS417_06350 0.89 -1.1 1,410,300 - PS417_06350 0.89 -0.1 1,410,300 - PS417_06350 0.89 -1.3 1,410,310 + PS417_06350 0.90 -0.3 1,410,613 + PS417_06355 0.34 -0.7 1,410,613 + PS417_06355 0.34 -0.4 1,410,638 + PS417_06355 0.37 +0.2 1,410,639 - -0.5
Or see this region's nucleotide sequence