Strain Fitness in Pseudomonas simiae WCS417 around PS417_02710

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02700 and PS417_02705 are separated by 13 nucleotidesPS417_02705 and PS417_02710 overlap by 4 nucleotidesPS417_02710 and PS417_02715 are separated by 276 nucleotidesPS417_02715 and PS417_02720 are separated by 5 nucleotides PS417_02700: PS417_02700 - urease accessory protein UreG, at 617,557 to 618,171 _02700 PS417_02705: PS417_02705 - urease accessory protein UreF, at 618,185 to 618,859 _02705 PS417_02710: PS417_02710 - Urease maturation and nickel insertion protein UreE (from data), at 618,856 to 619,356 _02710 PS417_02715: PS417_02715 - hypothetical protein, at 619,633 to 620,130 _02715 PS417_02720: PS417_02720 - TetR family transcriptional regulator, at 620,136 to 620,768 _02720 Position (kb) 618 619 620Strain fitness (log2 ratio) -2 -1 0 1 2at 618.044 kb on + strand, within PS417_02700at 618.044 kb on + strand, within PS417_02700at 618.045 kb on - strand, within PS417_02700at 618.075 kb on - strandat 618.171 kb on + strandat 618.171 kb on + strandat 618.171 kb on + strandat 618.171 kb on + strandat 618.171 kb on + strandat 618.172 kb on - strandat 618.172 kb on - strandat 618.172 kb on - strandat 618.172 kb on - strandat 618.197 kb on + strandat 618.582 kb on + strand, within PS417_02705at 618.583 kb on - strand, within PS417_02705at 618.677 kb on + strand, within PS417_02705at 618.796 kb on - strandat 618.898 kb on + strandat 619.022 kb on + strand, within PS417_02710at 619.022 kb on + strand, within PS417_02710at 619.023 kb on - strand, within PS417_02710at 619.023 kb on - strand, within PS417_02710at 619.089 kb on - strand, within PS417_02710at 619.163 kb on - strand, within PS417_02710at 619.372 kb on + strandat 619.373 kb on - strandat 619.390 kb on + strandat 619.391 kb on - strandat 619.391 kb on - strandat 619.436 kb on + strandat 619.436 kb on + strandat 619.436 kb on + strandat 619.436 kb on + strandat 619.579 kb on + strandat 619.579 kb on + strandat 619.579 kb on + strandat 619.580 kb on - strandat 619.595 kb on - strandat 619.595 kb on - strandat 619.613 kb on - strandat 619.613 kb on - strandat 619.670 kb on + strandat 619.670 kb on + strandat 619.785 kb on + strand, within PS417_02715at 619.792 kb on + strand, within PS417_02715at 619.792 kb on + strand, within PS417_02715at 619.793 kb on - strand, within PS417_02715at 619.793 kb on - strandat 619.849 kb on + strand, within PS417_02715at 620.005 kb on + strand, within PS417_02715at 620.005 kb on + strand, within PS417_02715at 620.005 kb on + strand, within PS417_02715at 620.005 kb on + strand, within PS417_02715at 620.005 kb on + strand, within PS417_02715at 620.005 kb on + strand, within PS417_02715at 620.005 kb on + strand, within PS417_02715at 620.005 kb on + strand, within PS417_02715at 620.006 kb on - strand, within PS417_02715at 620.006 kb on - strand, within PS417_02715at 620.007 kb on + strand, within PS417_02715at 620.008 kb on - strand, within PS417_02715at 620.008 kb on - strand, within PS417_02715at 620.009 kb on + strand, within PS417_02715at 620.009 kb on + strand, within PS417_02715at 620.010 kb on - strand, within PS417_02715at 620.080 kb on + strand, within PS417_02715at 620.081 kb on - strandat 620.095 kb on + strandat 620.095 kb on + strandat 620.095 kb on + strandat 620.138 kb on - strandat 620.183 kb on + strandat 620.183 kb on + strandat 620.183 kb on + strandat 620.184 kb on - strandat 620.184 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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618,044 + PS417_02700 0.79 +0.2
618,044 + PS417_02700 0.79 -1.5
618,045 - PS417_02700 0.79 +0.6
618,075 - +1.1
618,171 + +0.3
618,171 + -0.9
618,171 + -0.0
618,171 + -0.1
618,171 + +0.2
618,172 - +0.1
618,172 - +0.6
618,172 - +0.0
618,172 - -0.5
618,197 + -0.0
618,582 + PS417_02705 0.59 -1.2
618,583 - PS417_02705 0.59 +0.5
618,677 + PS417_02705 0.73 -0.0
618,796 - +1.1
618,898 + -0.8
619,022 + PS417_02710 0.33 +2.0
619,022 + PS417_02710 0.33 -0.1
619,023 - PS417_02710 0.33 +0.4
619,023 - PS417_02710 0.33 +1.3
619,089 - PS417_02710 0.47 +0.8
619,163 - PS417_02710 0.61 -1.5
619,372 + -0.7
619,373 - +0.4
619,390 + +0.2
619,391 - +0.6
619,391 - +0.1
619,436 + -1.9
619,436 + +0.6
619,436 + -0.1
619,436 + -0.5
619,579 + -0.5
619,579 + -0.1
619,579 + +0.5
619,580 - +2.1
619,595 - +1.7
619,595 - -0.8
619,613 - +0.3
619,613 - -0.3
619,670 + +0.8
619,670 + +2.7
619,785 + PS417_02715 0.31 -1.5
619,792 + PS417_02715 0.32 +2.1
619,792 + PS417_02715 0.32 +1.9
619,793 - PS417_02715 0.32 +0.4
619,793 - -1.2
619,849 + PS417_02715 0.43 -0.5
620,005 + PS417_02715 0.75 -0.3
620,005 + PS417_02715 0.75 -0.3
620,005 + PS417_02715 0.75 +0.1
620,005 + PS417_02715 0.75 -1.2
620,005 + PS417_02715 0.75 +0.1
620,005 + PS417_02715 0.75 +0.1
620,005 + PS417_02715 0.75 -0.0
620,005 + PS417_02715 0.75 +0.9
620,006 - PS417_02715 0.75 +2.1
620,006 - PS417_02715 0.75 -0.4
620,007 + PS417_02715 0.75 +0.1
620,008 - PS417_02715 0.75 -0.5
620,008 - PS417_02715 0.75 -0.9
620,009 + PS417_02715 0.76 -0.5
620,009 + PS417_02715 0.76 +0.4
620,010 - PS417_02715 0.76 +0.0
620,080 + PS417_02715 0.90 +0.7
620,081 - -0.2
620,095 + +1.1
620,095 + -0.5
620,095 + +0.2
620,138 - -1.6
620,183 + -0.9
620,183 + -0.5
620,183 + +1.1
620,184 - -0.6
620,184 - +1.9

Or see this region's nucleotide sequence