Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26995 and PS417_27000 are separated by 112 nucleotides PS417_27000 and PS417_27005 are separated by 0 nucleotides PS417_27005 and PS417_27010 are separated by 41 nucleotides
PS417_26995: PS417_26995 - phosphoserine phosphatase, at 5,830,749 to 5,831,405
_26995
PS417_27000: PS417_27000 - membrane protein, at 5,831,518 to 5,831,985
_27000
PS417_27005: PS417_27005 - membrane protein, at 5,831,986 to 5,832,399
_27005
PS417_27010: PS417_27010 - threonine dehydratase, at 5,832,441 to 5,833,955
_27010
Position (kb) 5831
5832
5833 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5830.986 kb on + strand, within PS417_26995 at 5830.986 kb on + strand, within PS417_26995 at 5830.987 kb on - strand, within PS417_26995 at 5830.987 kb on - strand, within PS417_26995 at 5830.988 kb on + strand, within PS417_26995 at 5830.988 kb on + strand, within PS417_26995 at 5830.988 kb on + strand, within PS417_26995 at 5830.988 kb on + strand, within PS417_26995 at 5830.989 kb on - strand, within PS417_26995 at 5830.989 kb on - strand, within PS417_26995 at 5831.271 kb on + strand, within PS417_26995 at 5831.271 kb on + strand, within PS417_26995 at 5831.271 kb on + strand, within PS417_26995 at 5831.272 kb on - strand, within PS417_26995 at 5831.272 kb on - strand, within PS417_26995 at 5831.277 kb on + strand, within PS417_26995 at 5831.277 kb on + strand, within PS417_26995 at 5831.519 kb on + strand at 5831.519 kb on + strand at 5831.523 kb on + strand at 5831.523 kb on + strand at 5831.523 kb on + strand at 5831.523 kb on + strand at 5831.524 kb on - strand at 5831.524 kb on - strand at 5831.524 kb on - strand at 5831.524 kb on - strand at 5831.524 kb on - strand at 5831.603 kb on + strand, within PS417_27000 at 5831.603 kb on + strand, within PS417_27000 at 5831.718 kb on - strand, within PS417_27000 at 5831.906 kb on + strand, within PS417_27000 at 5831.907 kb on - strand, within PS417_27000 at 5831.952 kb on + strand at 5831.952 kb on + strand at 5831.952 kb on + strand at 5831.953 kb on - strand at 5831.953 kb on - strand at 5831.975 kb on + strand at 5831.976 kb on - strand at 5831.988 kb on - strand at 5832.072 kb on + strand, within PS417_27005 at 5832.435 kb on - strand at 5832.461 kb on - strand at 5833.090 kb on + strand, within PS417_27010 at 5833.090 kb on + strand, within PS417_27010 at 5833.153 kb on + strand, within PS417_27010 at 5833.154 kb on - strand, within PS417_27010 at 5833.213 kb on + strand, within PS417_27010 at 5833.213 kb on + strand, within PS417_27010 at 5833.213 kb on + strand, within PS417_27010 at 5833.214 kb on - strand, within PS417_27010 at 5833.214 kb on - strand, within PS417_27010 at 5833.381 kb on + strand at 5833.381 kb on + strand, within PS417_27010 at 5833.390 kb on + strand, within PS417_27010 at 5833.391 kb on - strand, within PS417_27010 at 5833.391 kb on - strand, within PS417_27010 at 5833.391 kb on - strand, within PS417_27010
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,830,986 + PS417_26995 0.36 +0.5 5,830,986 + PS417_26995 0.36 -1.1 5,830,987 - PS417_26995 0.36 -0.8 5,830,987 - PS417_26995 0.36 -2.0 5,830,988 + PS417_26995 0.36 -0.6 5,830,988 + PS417_26995 0.36 -2.4 5,830,988 + PS417_26995 0.36 +0.4 5,830,988 + PS417_26995 0.36 -0.3 5,830,989 - PS417_26995 0.37 -0.8 5,830,989 - PS417_26995 0.37 -1.4 5,831,271 + PS417_26995 0.79 -2.1 5,831,271 + PS417_26995 0.79 -0.0 5,831,271 + PS417_26995 0.79 -0.3 5,831,272 - PS417_26995 0.80 -0.2 5,831,272 - PS417_26995 0.80 +1.9 5,831,277 + PS417_26995 0.80 -0.5 5,831,277 + PS417_26995 0.80 +0.3 5,831,519 + -1.4 5,831,519 + -0.2 5,831,523 + +0.0 5,831,523 + -0.4 5,831,523 + +0.1 5,831,523 + +0.2 5,831,524 - -1.3 5,831,524 - -1.1 5,831,524 - +0.9 5,831,524 - +0.5 5,831,524 - -1.2 5,831,603 + PS417_27000 0.18 +0.4 5,831,603 + PS417_27000 0.18 -2.1 5,831,718 - PS417_27000 0.43 +0.6 5,831,906 + PS417_27000 0.83 -0.1 5,831,907 - PS417_27000 0.83 -0.8 5,831,952 + +2.8 5,831,952 + -0.5 5,831,952 + +0.1 5,831,953 - +1.8 5,831,953 - -0.6 5,831,975 + -0.8 5,831,976 - -0.0 5,831,988 - -1.4 5,832,072 + PS417_27005 0.21 -0.9 5,832,435 - -0.4 5,832,461 - +1.8 5,833,090 + PS417_27010 0.43 -0.2 5,833,090 + PS417_27010 0.43 -0.2 5,833,153 + PS417_27010 0.47 +0.3 5,833,154 - PS417_27010 0.47 -0.2 5,833,213 + PS417_27010 0.51 -0.8 5,833,213 + PS417_27010 0.51 -0.4 5,833,213 + PS417_27010 0.51 -1.6 5,833,214 - PS417_27010 0.51 +0.2 5,833,214 - PS417_27010 0.51 -0.6 5,833,381 + -0.8 5,833,381 + PS417_27010 0.62 -1.0 5,833,390 + PS417_27010 0.63 -0.8 5,833,391 - PS417_27010 0.63 +1.2 5,833,391 - PS417_27010 0.63 -0.1 5,833,391 - PS417_27010 0.63 -0.8
Or see this region's nucleotide sequence