Strain Fitness in Pseudomonas simiae WCS417 around PS417_25725

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25715 and PS417_25720 are separated by 9 nucleotidesPS417_25720 and PS417_25725 are separated by 10 nucleotidesPS417_25725 and PS417_25730 are separated by 70 nucleotidesPS417_25730 and PS417_25735 overlap by 4 nucleotides PS417_25715: PS417_25715 - anthranilate phosphoribosyltransferase, at 5,551,575 to 5,552,624 _25715 PS417_25720: PS417_25720 - anthranilate synthase component II, at 5,552,634 to 5,553,227 _25720 PS417_25725: PS417_25725 - anthranilate synthase component I, at 5,553,238 to 5,554,719 _25725 PS417_25730: PS417_25730 - phosphoglycolate phosphatase, at 5,554,790 to 5,555,608 _25730 PS417_25735: PS417_25735 - ribulose-phosphate 3-epimerase, at 5,555,605 to 5,556,279 _25735 Position (kb) 5553 5554 5555Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5552.892 kb on + strand, within PS417_25720at 5552.893 kb on - strand, within PS417_25720at 5552.893 kb on - strand, within PS417_25720at 5552.949 kb on + strand, within PS417_25720at 5552.949 kb on + strand, within PS417_25720at 5552.949 kb on + strand, within PS417_25720at 5552.950 kb on - strand, within PS417_25720at 5553.025 kb on + strand, within PS417_25720at 5553.176 kb on - strandat 5553.176 kb on - strandat 5553.190 kb on + strandat 5553.194 kb on + strandat 5553.194 kb on + strandat 5553.194 kb on + strandat 5553.195 kb on - strandat 5553.195 kb on - strandat 5553.206 kb on - strandat 5553.206 kb on - strandat 5553.391 kb on - strand, within PS417_25725at 5553.434 kb on + strand, within PS417_25725at 5553.893 kb on + strand, within PS417_25725at 5553.893 kb on + strand, within PS417_25725at 5553.893 kb on + strand, within PS417_25725at 5553.894 kb on - strand, within PS417_25725at 5553.894 kb on - strand, within PS417_25725at 5553.894 kb on - strand, within PS417_25725at 5553.899 kb on + strand, within PS417_25725at 5553.899 kb on + strand, within PS417_25725at 5553.899 kb on + strand, within PS417_25725at 5553.899 kb on + strand, within PS417_25725at 5553.899 kb on + strand, within PS417_25725at 5553.900 kb on - strand, within PS417_25725at 5553.900 kb on - strand, within PS417_25725at 5554.011 kb on + strand, within PS417_25725at 5554.011 kb on + strand, within PS417_25725at 5554.011 kb on + strand, within PS417_25725at 5554.013 kb on + strand, within PS417_25725at 5554.013 kb on + strand, within PS417_25725at 5554.014 kb on - strand, within PS417_25725at 5554.014 kb on - strand, within PS417_25725at 5554.014 kb on - strand, within PS417_25725at 5554.014 kb on - strand, within PS417_25725at 5554.043 kb on + strand, within PS417_25725at 5554.044 kb on - strand, within PS417_25725at 5554.044 kb on - strand, within PS417_25725at 5554.057 kb on - strand, within PS417_25725at 5554.243 kb on + strand, within PS417_25725at 5554.355 kb on + strand, within PS417_25725at 5554.355 kb on + strand, within PS417_25725at 5554.356 kb on - strand, within PS417_25725at 5554.409 kb on + strand, within PS417_25725at 5554.409 kb on + strand, within PS417_25725at 5554.410 kb on - strandat 5554.508 kb on - strand, within PS417_25725at 5554.597 kb on - strandat 5554.680 kb on - strandat 5554.723 kb on - strandat 5554.744 kb on + strandat 5554.755 kb on + strandat 5554.901 kb on + strand, within PS417_25730at 5554.902 kb on - strand, within PS417_25730at 5554.998 kb on + strand, within PS417_25730at 5554.999 kb on - strand, within PS417_25730at 5555.004 kb on + strand, within PS417_25730at 5555.015 kb on + strand, within PS417_25730at 5555.015 kb on + strand, within PS417_25730at 5555.015 kb on + strand, within PS417_25730at 5555.095 kb on + strand, within PS417_25730at 5555.181 kb on + strand, within PS417_25730

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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5,552,892 + PS417_25720 0.43 -0.4
5,552,893 - PS417_25720 0.44 -1.5
5,552,893 - PS417_25720 0.44 -2.1
5,552,949 + PS417_25720 0.53 -2.6
5,552,949 + PS417_25720 0.53 -1.1
5,552,949 + PS417_25720 0.53 -1.3
5,552,950 - PS417_25720 0.53 -3.2
5,553,025 + PS417_25720 0.66 -2.9
5,553,176 - +0.1
5,553,176 - -1.9
5,553,190 + -1.7
5,553,194 + -0.9
5,553,194 + -0.9
5,553,194 + -2.0
5,553,195 - +1.1
5,553,195 - -1.7
5,553,206 - -0.3
5,553,206 - -2.3
5,553,391 - PS417_25725 0.10 -1.7
5,553,434 + PS417_25725 0.13 -1.9
5,553,893 + PS417_25725 0.44 -1.0
5,553,893 + PS417_25725 0.44 -4.2
5,553,893 + PS417_25725 0.44 -2.4
5,553,894 - PS417_25725 0.44 -2.1
5,553,894 - PS417_25725 0.44 -1.6
5,553,894 - PS417_25725 0.44 -1.2
5,553,899 + PS417_25725 0.45 -2.3
5,553,899 + PS417_25725 0.45 -2.0
5,553,899 + PS417_25725 0.45 -3.9
5,553,899 + PS417_25725 0.45 -2.7
5,553,899 + PS417_25725 0.45 -2.8
5,553,900 - PS417_25725 0.45 -2.8
5,553,900 - PS417_25725 0.45 -1.7
5,554,011 + PS417_25725 0.52 -1.7
5,554,011 + PS417_25725 0.52 -3.1
5,554,011 + PS417_25725 0.52 -1.5
5,554,013 + PS417_25725 0.52 -2.3
5,554,013 + PS417_25725 0.52 -2.3
5,554,014 - PS417_25725 0.52 -1.5
5,554,014 - PS417_25725 0.52 -1.1
5,554,014 - PS417_25725 0.52 -1.6
5,554,014 - PS417_25725 0.52 -2.4
5,554,043 + PS417_25725 0.54 -1.9
5,554,044 - PS417_25725 0.54 -3.3
5,554,044 - PS417_25725 0.54 -2.1
5,554,057 - PS417_25725 0.55 -3.0
5,554,243 + PS417_25725 0.68 -1.5
5,554,355 + PS417_25725 0.75 -2.4
5,554,355 + PS417_25725 0.75 -1.3
5,554,356 - PS417_25725 0.75 -1.3
5,554,409 + PS417_25725 0.79 -2.5
5,554,409 + PS417_25725 0.79 -1.3
5,554,410 - -0.5
5,554,508 - PS417_25725 0.86 -2.9
5,554,597 - -2.1
5,554,680 - +1.1
5,554,723 - +0.8
5,554,744 + -1.4
5,554,755 + -1.9
5,554,901 + PS417_25730 0.14 -0.3
5,554,902 - PS417_25730 0.14 +0.3
5,554,998 + PS417_25730 0.25 +0.5
5,554,999 - PS417_25730 0.26 -0.5
5,555,004 + PS417_25730 0.26 +1.7
5,555,015 + PS417_25730 0.27 +1.1
5,555,015 + PS417_25730 0.27 -2.3
5,555,015 + PS417_25730 0.27 +0.8
5,555,095 + PS417_25730 0.37 -0.0
5,555,181 + PS417_25730 0.48 -1.2

Or see this region's nucleotide sequence