Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25265 and PS417_25270 overlap by 4 nucleotides PS417_25270 and PS417_25275 are separated by 140 nucleotides PS417_25275 and PS417_25280 overlap by 4 nucleotides
PS417_25265: PS417_25265 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 5,473,267 to 5,474,403
_25265
PS417_25270: PS417_25270 - NrdR family transcriptional regulator, at 5,474,400 to 5,474,864
_25270
PS417_25275: PS417_25275 - hypothetical protein, at 5,475,005 to 5,475,460
_25275
PS417_25280: PS417_25280 - methyltransferase, at 5,475,457 to 5,476,113
_25280
Position (kb) 5474
5475 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.725 kb on - strand, within PS417_25270 at 5474.883 kb on - strand at 5474.883 kb on - strand at 5474.883 kb on - strand at 5474.935 kb on - strand at 5474.939 kb on + strand at 5474.939 kb on + strand at 5474.940 kb on - strand at 5474.940 kb on - strand at 5474.941 kb on + strand at 5474.942 kb on - strand at 5474.942 kb on - strand at 5474.943 kb on + strand at 5474.943 kb on + strand at 5474.943 kb on + strand at 5474.943 kb on + strand at 5474.944 kb on - strand at 5474.944 kb on - strand at 5474.944 kb on - strand at 5474.944 kb on - strand at 5474.953 kb on - strand at 5474.955 kb on + strand at 5474.956 kb on - strand at 5474.956 kb on - strand at 5475.002 kb on + strand at 5475.002 kb on + strand at 5475.002 kb on + strand at 5475.003 kb on - strand at 5475.003 kb on - strand at 5475.003 kb on - strand at 5475.267 kb on + strand, within PS417_25275 at 5475.267 kb on + strand, within PS417_25275 at 5475.268 kb on - strand, within PS417_25275 at 5475.552 kb on - strand, within PS417_25280 at 5475.671 kb on - strand, within PS417_25280 at 5475.853 kb on + strand, within PS417_25280
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,474,495 - PS417_25270 0.20 -1.1 5,474,495 - PS417_25270 0.20 +1.1 5,474,495 - PS417_25270 0.20 -1.3 5,474,495 - PS417_25270 0.20 -0.5 5,474,495 - PS417_25270 0.20 -2.4 5,474,725 - PS417_25270 0.70 -2.2 5,474,883 - -0.9 5,474,883 - -1.0 5,474,883 - -0.2 5,474,935 - +0.5 5,474,939 + +0.3 5,474,939 + -1.3 5,474,940 - +0.4 5,474,940 - -0.4 5,474,941 + -0.2 5,474,942 - +1.2 5,474,942 - -2.2 5,474,943 + -0.5 5,474,943 + -1.3 5,474,943 + +0.5 5,474,943 + -0.3 5,474,944 - +0.1 5,474,944 - +1.3 5,474,944 - +2.0 5,474,944 - -0.5 5,474,953 - -0.1 5,474,955 + -0.7 5,474,956 - -2.5 5,474,956 - -1.0 5,475,002 + +0.8 5,475,002 + +1.5 5,475,002 + +0.8 5,475,003 - +0.5 5,475,003 - +0.1 5,475,003 - -1.5 5,475,267 + PS417_25275 0.57 -0.2 5,475,267 + PS417_25275 0.57 -0.5 5,475,268 - PS417_25275 0.58 +0.2 5,475,552 - PS417_25280 0.14 +2.3 5,475,671 - PS417_25280 0.33 +0.6 5,475,853 + PS417_25280 0.60 -0.9
Or see this region's nucleotide sequence