Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01605 and PS417_01610 are separated by 151 nucleotides PS417_01610 and PS417_01615 are separated by 1 nucleotides PS417_01615 and PS417_01620 are separated by 41 nucleotides PS417_01620 and PS417_01625 are separated by 119 nucleotides PS417_01625 and PS417_01630 overlap by 2 nucleotides
PS417_01605: PS417_01605 - phosphoglycerate mutase, at 353,754 to 355,280
_01605
PS417_01610: PS417_01610 - sulfurtransferase, at 355,432 to 355,845
_01610
PS417_01615: PS417_01615 - glutaredoxin, at 355,847 to 356,101
_01615
PS417_01620: PS417_01620 - preprotein translocase subunit SecB, at 356,143 to 356,622
_01620
PS417_01625: PS417_01625 - rRNA methylase, at 356,742 to 357,197
_01625
PS417_01630: PS417_01630 - hypothetical protein, at 357,196 to 357,636
_01630
Position (kb) 356
357 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 355.281 kb on - strand at 355.281 kb on - strand at 355.281 kb on - strand at 355.281 kb on - strand at 355.301 kb on + strand at 355.394 kb on + strand at 355.394 kb on + strand at 355.396 kb on + strand at 355.396 kb on + strand at 355.396 kb on + strand at 355.846 kb on + strand at 355.846 kb on + strand at 356.107 kb on - strand at 356.113 kb on + strand at 356.209 kb on + strand, within PS417_01620 at 356.209 kb on + strand, within PS417_01620 at 356.407 kb on - strand, within PS417_01620 at 356.620 kb on + strand at 356.620 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.735 kb on + strand at 356.743 kb on + strand at 356.868 kb on + strand, within PS417_01625 at 357.261 kb on + strand, within PS417_01630 at 357.262 kb on - strand, within PS417_01630
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 355,281 - -1.8 355,281 - -0.0 355,281 - -0.1 355,281 - -0.2 355,301 + -0.1 355,394 + +2.1 355,394 + -0.7 355,396 + +0.1 355,396 + -0.3 355,396 + -0.5 355,846 + +1.9 355,846 + -0.2 356,107 - -0.5 356,113 + -1.3 356,209 + PS417_01620 0.14 +0.4 356,209 + PS417_01620 0.14 +0.5 356,407 - PS417_01620 0.55 +3.4 356,620 + -0.6 356,620 + -2.0 356,681 + -0.6 356,681 + -0.4 356,681 + -1.2 356,681 + +0.6 356,681 + +0.2 356,681 + +0.0 356,681 + +0.1 356,682 - -0.7 356,682 - +0.2 356,682 - -1.4 356,682 - -0.3 356,682 - +0.3 356,682 - +0.5 356,682 - +0.1 356,682 - -0.3 356,682 - -0.2 356,735 + +1.1 356,743 + -0.9 356,868 + PS417_01625 0.28 -1.2 357,261 + PS417_01630 0.15 +0.3 357,262 - PS417_01630 0.15 -0.2
Or see this region's nucleotide sequence