Strain Fitness in Pseudomonas simiae WCS417 around PS417_01245

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01230 and PS417_01235 overlap by 28 nucleotidesPS417_01235 and PS417_01245 are separated by 345 nucleotidesPS417_01245 and PS417_01250 are separated by 284 nucleotides PS417_01230: PS417_01230 - hypothetical protein, at 268,878 to 269,123 _01230 PS417_01235: PS417_01235 - cell division protein Fic, at 269,096 to 269,695 _01235 PS417_01245: PS417_01245 - hypothetical protein, at 270,041 to 271,216 _01245 PS417_01250: PS417_01250 - ATP-dependent DNA helicase RecQ, at 271,501 to 273,438 _01250 Position (kb) 270 271 272Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 269.078 kb on + strand, within PS417_01230at 269.119 kb on + strandat 269.120 kb on - strandat 269.173 kb on + strand, within PS417_01235at 269.173 kb on + strand, within PS417_01235at 269.361 kb on + strand, within PS417_01235at 269.361 kb on + strand, within PS417_01235at 269.362 kb on - strand, within PS417_01235at 269.485 kb on - strand, within PS417_01235at 269.512 kb on + strand, within PS417_01235at 269.513 kb on - strand, within PS417_01235at 269.513 kb on - strand, within PS417_01235at 269.513 kb on - strand, within PS417_01235at 269.535 kb on + strand, within PS417_01235at 269.536 kb on - strand, within PS417_01235at 269.828 kb on + strandat 269.873 kb on + strandat 269.899 kb on + strandat 269.949 kb on + strandat 269.982 kb on + strandat 269.983 kb on - strandat 269.983 kb on - strandat 269.983 kb on - strandat 270.004 kb on + strandat 270.005 kb on - strandat 270.022 kb on + strandat 270.023 kb on - strandat 270.023 kb on - strandat 270.026 kb on + strandat 270.026 kb on + strandat 270.027 kb on - strandat 270.027 kb on - strandat 270.036 kb on + strandat 270.037 kb on - strandat 270.037 kb on - strandat 270.124 kb on - strandat 270.332 kb on + strand, within PS417_01245at 270.332 kb on + strand, within PS417_01245at 270.332 kb on + strand, within PS417_01245at 270.333 kb on - strand, within PS417_01245at 270.333 kb on - strand, within PS417_01245at 270.500 kb on + strand, within PS417_01245at 270.536 kb on + strand, within PS417_01245at 270.548 kb on + strand, within PS417_01245at 270.548 kb on + strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.555 kb on - strand, within PS417_01245at 270.555 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.655 kb on + strand, within PS417_01245at 270.659 kb on + strand, within PS417_01245at 270.659 kb on + strand, within PS417_01245at 270.662 kb on + strand, within PS417_01245at 270.662 kb on + strand, within PS417_01245at 270.662 kb on + strand, within PS417_01245at 270.843 kb on + strand, within PS417_01245at 270.844 kb on - strand, within PS417_01245at 270.986 kb on + strand, within PS417_01245at 271.085 kb on + strand, within PS417_01245at 271.085 kb on + strand, within PS417_01245at 271.085 kb on + strand, within PS417_01245at 271.088 kb on + strand, within PS417_01245at 271.088 kb on + strand, within PS417_01245at 271.089 kb on - strand, within PS417_01245at 271.106 kb on + strandat 271.107 kb on - strandat 271.225 kb on + strandat 271.225 kb on + strandat 271.225 kb on + strandat 271.226 kb on - strandat 271.283 kb on + strandat 271.283 kb on + strandat 271.284 kb on - strandat 271.284 kb on - strandat 271.284 kb on - strandat 271.284 kb on - strandat 271.284 kb on - strandat 271.347 kb on + strandat 271.348 kb on - strandat 271.348 kb on - strandat 271.348 kb on - strandat 271.348 kb on - strandat 271.402 kb on + strandat 271.402 kb on + strandat 271.402 kb on + strandat 271.402 kb on + strandat 271.402 kb on + strandat 271.403 kb on - strandat 271.403 kb on - strandat 271.403 kb on - strandat 271.403 kb on - strandat 271.460 kb on - strandat 271.474 kb on - strandat 271.633 kb on + strandat 271.731 kb on + strand, within PS417_01250at 271.731 kb on + strand, within PS417_01250at 271.747 kb on - strand, within PS417_01250at 271.915 kb on - strand, within PS417_01250at 271.967 kb on - strand, within PS417_01250at 272.089 kb on + strand, within PS417_01250

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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269,078 + PS417_01230 0.81 +0.2
269,119 + -0.2
269,120 - +0.3
269,173 + PS417_01235 0.13 -2.6
269,173 + PS417_01235 0.13 +0.1
269,361 + PS417_01235 0.44 -0.2
269,361 + PS417_01235 0.44 +0.1
269,362 - PS417_01235 0.44 +0.2
269,485 - PS417_01235 0.65 +0.1
269,512 + PS417_01235 0.69 -0.9
269,513 - PS417_01235 0.69 -0.2
269,513 - PS417_01235 0.69 +0.1
269,513 - PS417_01235 0.69 +0.6
269,535 + PS417_01235 0.73 -0.2
269,536 - PS417_01235 0.73 +0.2
269,828 + -0.3
269,873 + +0.2
269,899 + +1.2
269,949 + -1.9
269,982 + +0.4
269,983 - +4.6
269,983 - -0.1
269,983 - -1.0
270,004 + -0.3
270,005 - +0.3
270,022 + -1.0
270,023 - -0.5
270,023 - +0.4
270,026 + +0.6
270,026 + +1.1
270,027 - -0.2
270,027 - -0.2
270,036 + -0.4
270,037 - +1.0
270,037 - +0.5
270,124 - -0.7
270,332 + PS417_01245 0.25 -0.6
270,332 + PS417_01245 0.25 -0.1
270,332 + PS417_01245 0.25 -0.4
270,333 - PS417_01245 0.25 +1.5
270,333 - PS417_01245 0.25 +0.0
270,500 + PS417_01245 0.39 -0.6
270,536 + PS417_01245 0.42 -0.4
270,548 + PS417_01245 0.43 +1.6
270,548 + PS417_01245 0.43 +0.5
270,549 - PS417_01245 0.43 -2.4
270,549 - PS417_01245 0.43 -1.4
270,549 - PS417_01245 0.43 +0.2
270,549 - PS417_01245 0.43 +0.1
270,549 - PS417_01245 0.43 +0.1
270,555 - PS417_01245 0.44 -0.5
270,555 - PS417_01245 0.44 +0.1
270,633 - PS417_01245 0.50 +0.2
270,633 - PS417_01245 0.50 +0.1
270,633 - PS417_01245 0.50 -0.9
270,633 - PS417_01245 0.50 -1.1
270,655 + PS417_01245 0.52 +0.1
270,659 + PS417_01245 0.53 +0.1
270,659 + PS417_01245 0.53 -1.1
270,662 + PS417_01245 0.53 +2.6
270,662 + PS417_01245 0.53 +2.1
270,662 + PS417_01245 0.53 -0.9
270,843 + PS417_01245 0.68 -0.5
270,844 - PS417_01245 0.68 -3.2
270,986 + PS417_01245 0.80 +0.2
271,085 + PS417_01245 0.89 -0.4
271,085 + PS417_01245 0.89 -1.5
271,085 + PS417_01245 0.89 -1.0
271,088 + PS417_01245 0.89 +1.1
271,088 + PS417_01245 0.89 -0.5
271,089 - PS417_01245 0.89 -0.3
271,106 + -0.5
271,107 - +1.1
271,225 + +0.5
271,225 + -0.2
271,225 + -0.2
271,226 - +0.4
271,283 + -0.1
271,283 + -0.5
271,284 - +0.5
271,284 - +0.1
271,284 - +0.9
271,284 - -0.3
271,284 - +0.3
271,347 + +0.2
271,348 - +1.5
271,348 - +0.1
271,348 - -0.5
271,348 - -0.4
271,402 + +0.6
271,402 + +0.2
271,402 + +0.5
271,402 + +0.5
271,402 + -0.0
271,403 - +1.8
271,403 - -0.9
271,403 - +0.5
271,403 - -0.1
271,460 - -1.0
271,474 - -0.5
271,633 + -0.7
271,731 + PS417_01250 0.12 -0.2
271,731 + PS417_01250 0.12 -0.2
271,747 - PS417_01250 0.13 +0.1
271,915 - PS417_01250 0.21 -1.9
271,967 - PS417_01250 0.24 +0.5
272,089 + PS417_01250 0.30 +1.1

Or see this region's nucleotide sequence