Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01115 and PS417_01120 are separated by 270 nucleotides PS417_01120 and PS417_01125 are separated by 179 nucleotides
PS417_01115: PS417_01115 - serine acetyltransferase, at 243,852 to 244,778
_01115
PS417_01120: PS417_01120 - choline transporter, at 245,049 to 247,049
_01120
PS417_01125: PS417_01125 - cysteine desulfhydrase, at 247,229 to 248,557
_01125
Position (kb) 245
246
247
248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 244.075 kb on - strand, within PS417_01115 at 244.531 kb on - strand, within PS417_01115 at 244.635 kb on + strand, within PS417_01115 at 244.734 kb on - strand at 244.855 kb on + strand at 244.870 kb on + strand at 244.870 kb on + strand at 244.871 kb on - strand at 244.875 kb on + strand at 244.875 kb on + strand at 244.876 kb on - strand at 244.876 kb on - strand at 244.883 kb on - strand at 244.886 kb on + strand at 244.924 kb on + strand at 244.925 kb on - strand at 244.991 kb on + strand at 244.992 kb on - strand at 244.992 kb on - strand at 245.013 kb on + strand at 245.014 kb on - strand at 245.139 kb on - strand at 245.141 kb on + strand at 245.142 kb on - strand at 245.223 kb on + strand at 245.223 kb on + strand at 245.223 kb on + strand at 245.223 kb on + strand at 245.224 kb on - strand at 245.244 kb on + strand at 245.291 kb on - strand, within PS417_01120 at 245.291 kb on - strand, within PS417_01120 at 245.328 kb on + strand, within PS417_01120 at 245.655 kb on - strand, within PS417_01120 at 245.718 kb on + strand, within PS417_01120 at 245.719 kb on - strand, within PS417_01120 at 245.719 kb on - strand, within PS417_01120 at 245.977 kb on - strand, within PS417_01120 at 246.087 kb on - strand, within PS417_01120 at 246.087 kb on - strand, within PS417_01120 at 246.244 kb on - strand, within PS417_01120 at 246.262 kb on - strand, within PS417_01120 at 246.353 kb on + strand, within PS417_01120 at 246.353 kb on + strand, within PS417_01120 at 246.354 kb on - strand, within PS417_01120 at 246.354 kb on - strand, within PS417_01120 at 246.354 kb on - strand, within PS417_01120 at 246.354 kb on - strand, within PS417_01120 at 246.354 kb on - strand, within PS417_01120 at 246.556 kb on - strand, within PS417_01120 at 246.684 kb on + strand, within PS417_01120 at 246.855 kb on + strand at 246.957 kb on + strand at 246.957 kb on + strand at 246.958 kb on - strand at 246.972 kb on + strand at 247.012 kb on - strand at 247.151 kb on + strand at 247.151 kb on + strand at 247.255 kb on + strand at 247.255 kb on + strand at 247.256 kb on - strand at 247.279 kb on + strand at 247.418 kb on + strand, within PS417_01125 at 247.463 kb on + strand, within PS417_01125 at 247.464 kb on - strand, within PS417_01125 at 247.635 kb on - strand, within PS417_01125 at 247.748 kb on - strand, within PS417_01125 at 247.748 kb on - strand, within PS417_01125 at 247.883 kb on + strand, within PS417_01125 at 247.884 kb on - strand, within PS417_01125 at 247.884 kb on - strand, within PS417_01125 at 247.884 kb on - strand, within PS417_01125 at 247.902 kb on - strand, within PS417_01125 at 247.902 kb on - strand, within PS417_01125 at 247.904 kb on + strand, within PS417_01125
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 244,075 - PS417_01115 0.24 -1.5 244,531 - PS417_01115 0.73 -0.2 244,635 + PS417_01115 0.84 -0.6 244,734 - -0.2 244,855 + +0.4 244,870 + -0.7 244,870 + -1.2 244,871 - +0.0 244,875 + +0.8 244,875 + +0.2 244,876 - -0.4 244,876 - +0.3 244,883 - -0.8 244,886 + +0.1 244,924 + +1.0 244,925 - +0.3 244,991 + -0.0 244,992 - -0.5 244,992 - -1.4 245,013 + -0.5 245,014 - +0.3 245,139 - +0.1 245,141 + -0.8 245,142 - +0.2 245,223 + +0.7 245,223 + -0.5 245,223 + +0.7 245,223 + +0.1 245,224 - -0.7 245,244 + +0.8 245,291 - PS417_01120 0.12 +0.9 245,291 - PS417_01120 0.12 -0.3 245,328 + PS417_01120 0.14 -0.5 245,655 - PS417_01120 0.30 -0.7 245,718 + PS417_01120 0.33 -0.5 245,719 - PS417_01120 0.33 +1.6 245,719 - PS417_01120 0.33 +5.8 245,977 - PS417_01120 0.46 +0.3 246,087 - PS417_01120 0.52 -2.5 246,087 - PS417_01120 0.52 +0.5 246,244 - PS417_01120 0.60 +0.1 246,262 - PS417_01120 0.61 +0.3 246,353 + PS417_01120 0.65 -0.4 246,353 + PS417_01120 0.65 -0.5 246,354 - PS417_01120 0.65 +1.1 246,354 - PS417_01120 0.65 +0.1 246,354 - PS417_01120 0.65 +0.0 246,354 - PS417_01120 0.65 +2.1 246,354 - PS417_01120 0.65 +2.8 246,556 - PS417_01120 0.75 +0.0 246,684 + PS417_01120 0.82 -0.3 246,855 + -1.1 246,957 + -0.3 246,957 + -0.3 246,958 - -0.1 246,972 + -0.2 247,012 - +0.5 247,151 + +2.7 247,151 + -2.5 247,255 + -0.9 247,255 + -3.4 247,256 - -0.9 247,279 + +0.1 247,418 + PS417_01125 0.14 -1.1 247,463 + PS417_01125 0.18 +0.4 247,464 - PS417_01125 0.18 -1.9 247,635 - PS417_01125 0.31 +0.0 247,748 - PS417_01125 0.39 +1.1 247,748 - PS417_01125 0.39 -0.4 247,883 + PS417_01125 0.49 +0.7 247,884 - PS417_01125 0.49 -0.7 247,884 - PS417_01125 0.49 -0.4 247,884 - PS417_01125 0.49 -0.2 247,902 - PS417_01125 0.51 -0.5 247,902 - PS417_01125 0.51 +1.1 247,904 + PS417_01125 0.51 -0.5
Or see this region's nucleotide sequence