Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04215 and PS417_04220 overlap by 4 nucleotides PS417_04220 and PS417_04225 overlap by 4 nucleotides PS417_04225 and PS417_04230 are separated by 58 nucleotides PS417_04230 and PS417_04235 are separated by 157 nucleotides
PS417_04215: PS417_04215 - malate transporter, at 945,469 to 946,410
_04215
PS417_04220: PS417_04220 - 4-carboxymuconolactone decarboxylase, at 946,407 to 946,787
_04220
PS417_04225: PS417_04225 - conjugal transfer protein TraR, at 946,784 to 947,830
_04225
PS417_04230: PS417_04230 - lipoprotein, at 947,889 to 948,260
_04230
PS417_04235: PS417_04235 - glutamyl-tRNA amidotransferase, at 948,418 to 949,863
_04235
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1
2 at 945.829 kb on + strand, within PS417_04215 at 945.886 kb on + strand, within PS417_04215 at 945.887 kb on - strand, within PS417_04215 at 945.920 kb on - strand, within PS417_04215 at 945.920 kb on - strand, within PS417_04215 at 946.252 kb on + strand, within PS417_04215 at 946.252 kb on + strand, within PS417_04215 at 946.253 kb on - strand, within PS417_04215 at 946.408 kb on + strand at 946.409 kb on - strand at 946.484 kb on - strand, within PS417_04220 at 946.866 kb on + strand at 946.866 kb on + strand at 946.866 kb on + strand at 946.866 kb on + strand at 946.866 kb on + strand at 946.867 kb on - strand at 946.869 kb on + strand at 946.869 kb on + strand at 946.869 kb on + strand at 946.869 kb on + strand at 946.870 kb on - strand at 946.870 kb on - strand at 946.870 kb on - strand at 946.870 kb on - strand at 946.915 kb on + strand, within PS417_04225 at 946.915 kb on + strand, within PS417_04225 at 947.620 kb on + strand, within PS417_04225 at 948.131 kb on + strand, within PS417_04230 at 948.132 kb on - strand, within PS417_04230 at 948.132 kb on - strand, within PS417_04230 at 948.157 kb on + strand, within PS417_04230 at 948.157 kb on + strand, within PS417_04230 at 948.158 kb on - strand, within PS417_04230 at 948.158 kb on - strand, within PS417_04230 at 948.312 kb on + strand at 948.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 945,829 + PS417_04215 0.38 +1.5 945,886 + PS417_04215 0.44 +1.1 945,887 - PS417_04215 0.44 -0.1 945,920 - PS417_04215 0.48 +1.9 945,920 - PS417_04215 0.48 -0.2 946,252 + PS417_04215 0.83 -1.4 946,252 + PS417_04215 0.83 -0.4 946,253 - PS417_04215 0.83 +0.4 946,408 + +1.5 946,409 - +0.8 946,484 - PS417_04220 0.20 -0.2 946,866 + -0.8 946,866 + -0.6 946,866 + -0.6 946,866 + -0.9 946,866 + -0.4 946,867 - -0.2 946,869 + -1.3 946,869 + +1.1 946,869 + -0.7 946,869 + -0.5 946,870 - +0.3 946,870 - -0.1 946,870 - +0.1 946,870 - -0.8 946,915 + PS417_04225 0.13 -1.2 946,915 + PS417_04225 0.13 -0.5 947,620 + PS417_04225 0.80 -0.4 948,131 + PS417_04230 0.65 +0.1 948,132 - PS417_04230 0.65 -0.5 948,132 - PS417_04230 0.65 -0.7 948,157 + PS417_04230 0.72 -0.2 948,157 + PS417_04230 0.72 -1.2 948,158 - PS417_04230 0.72 -1.8 948,158 - PS417_04230 0.72 +0.0 948,312 + +0.9 948,313 - +1.8
Or see this region's nucleotide sequence