Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03520 and PS417_03525 are separated by 14 nucleotides PS417_03525 and PS417_03530 are separated by 1 nucleotides PS417_03530 and PS417_03535 are separated by 74 nucleotides PS417_03535 and PS417_03540 are separated by 2 nucleotides PS417_03540 and PS417_03545 overlap by 8 nucleotides
PS417_03520: PS417_03520 - secretin, at 804,661 to 806,802
_03520
PS417_03525: PS417_03525 - hypothetical protein, at 806,817 to 807,209
_03525
PS417_03530: PS417_03530 - hypothetical protein, at 807,211 to 807,429
_03530
PS417_03535: PS417_03535 - type III secretion protein, at 807,504 to 808,115
_03535
PS417_03540: PS417_03540 - type III secretion protein, at 808,118 to 808,675
_03540
PS417_03545: PS417_03545 - type III secretion protein, at 808,668 to 809,489
_03545
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 806.605 kb on + strand at 806.796 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.803 kb on - strand at 806.803 kb on - strand at 806.803 kb on - strand at 806.818 kb on + strand at 807.132 kb on + strand, within PS417_03525 at 807.162 kb on + strand, within PS417_03525 at 807.187 kb on + strand at 807.273 kb on - strand, within PS417_03530 at 807.278 kb on + strand, within PS417_03530 at 807.359 kb on + strand, within PS417_03530 at 807.360 kb on - strand, within PS417_03530 at 807.378 kb on + strand, within PS417_03530 at 807.378 kb on + strand, within PS417_03530 at 807.436 kb on - strand at 807.436 kb on - strand at 807.480 kb on - strand at 807.491 kb on + strand at 807.527 kb on + strand at 807.527 kb on + strand at 807.616 kb on - strand at 807.734 kb on + strand, within PS417_03535 at 807.735 kb on - strand, within PS417_03535 at 807.779 kb on + strand, within PS417_03535 at 807.779 kb on + strand, within PS417_03535 at 807.780 kb on - strand, within PS417_03535 at 807.782 kb on + strand, within PS417_03535 at 807.810 kb on + strand, within PS417_03535 at 807.811 kb on - strand, within PS417_03535 at 807.822 kb on - strand, within PS417_03535 at 807.921 kb on + strand, within PS417_03535 at 807.975 kb on + strand, within PS417_03535 at 807.975 kb on + strand at 807.975 kb on + strand, within PS417_03535 at 807.976 kb on - strand, within PS417_03535 at 807.978 kb on + strand, within PS417_03535 at 807.979 kb on - strand, within PS417_03535 at 808.031 kb on - strand, within PS417_03535 at 808.119 kb on + strand at 808.174 kb on + strand, within PS417_03540 at 808.248 kb on - strand, within PS417_03540 at 808.256 kb on + strand, within PS417_03540 at 808.256 kb on + strand, within PS417_03540 at 808.384 kb on + strand, within PS417_03540 at 808.385 kb on - strand, within PS417_03540 at 808.385 kb on - strand, within PS417_03540 at 808.499 kb on + strand, within PS417_03540 at 808.500 kb on - strand, within PS417_03540 at 808.524 kb on - strand, within PS417_03540 at 808.583 kb on + strand, within PS417_03540 at 808.583 kb on + strand, within PS417_03540 at 808.584 kb on - strand, within PS417_03540 at 808.584 kb on - strand, within PS417_03540 at 808.584 kb on - strand, within PS417_03540 at 808.585 kb on + strand, within PS417_03540 at 808.586 kb on - strand, within PS417_03540 at 808.586 kb on - strand, within PS417_03540 at 808.586 kb on - strand, within PS417_03540 at 808.596 kb on + strand, within PS417_03540 at 808.596 kb on + strand, within PS417_03540 at 808.596 kb on + strand, within PS417_03540 at 808.629 kb on + strand at 808.629 kb on + strand at 808.629 kb on + strand at 808.630 kb on - strand at 808.630 kb on - strand at 808.631 kb on + strand at 808.632 kb on - strand at 808.669 kb on + strand at 808.669 kb on + strand at 808.772 kb on + strand, within PS417_03545 at 808.773 kb on - strand, within PS417_03545 at 808.773 kb on - strand, within PS417_03545 at 808.773 kb on - strand, within PS417_03545 at 808.870 kb on + strand, within PS417_03545 at 808.894 kb on + strand, within PS417_03545 at 808.895 kb on - strand, within PS417_03545 at 809.018 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 806,605 + -0.7 806,796 + -0.0 806,802 + +0.8 806,802 + -0.2 806,802 + +0.8 806,802 + +1.1 806,802 + -0.0 806,802 + -0.6 806,803 - +0.6 806,803 - +1.4 806,803 - -1.8 806,818 + +0.2 807,132 + PS417_03525 0.80 -0.2 807,162 + PS417_03525 0.88 -0.6 807,187 + -0.3 807,273 - PS417_03530 0.28 -1.7 807,278 + PS417_03530 0.31 -0.4 807,359 + PS417_03530 0.68 -0.7 807,360 - PS417_03530 0.68 -0.9 807,378 + PS417_03530 0.76 +0.1 807,378 + PS417_03530 0.76 -0.0 807,436 - -0.9 807,436 - -0.9 807,480 - -0.8 807,491 + -0.3 807,527 + -0.2 807,527 + +1.8 807,616 - +0.8 807,734 + PS417_03535 0.38 -0.3 807,735 - PS417_03535 0.38 +3.4 807,779 + PS417_03535 0.45 +0.9 807,779 + PS417_03535 0.45 +1.0 807,780 - PS417_03535 0.45 +0.1 807,782 + PS417_03535 0.45 +0.3 807,810 + PS417_03535 0.50 +0.0 807,811 - PS417_03535 0.50 +0.4 807,822 - PS417_03535 0.52 +1.8 807,921 + PS417_03535 0.68 +0.8 807,975 + PS417_03535 0.77 -0.5 807,975 + +1.0 807,975 + PS417_03535 0.77 +3.5 807,976 - PS417_03535 0.77 +0.0 807,978 + PS417_03535 0.77 -0.1 807,979 - PS417_03535 0.78 +1.0 808,031 - PS417_03535 0.86 +0.3 808,119 + +0.2 808,174 + PS417_03540 0.10 -0.0 808,248 - PS417_03540 0.23 +1.2 808,256 + PS417_03540 0.25 -0.6 808,256 + PS417_03540 0.25 -0.2 808,384 + PS417_03540 0.48 +0.8 808,385 - PS417_03540 0.48 +0.5 808,385 - PS417_03540 0.48 -0.3 808,499 + PS417_03540 0.68 -0.3 808,500 - PS417_03540 0.68 -0.3 808,524 - PS417_03540 0.73 -0.3 808,583 + PS417_03540 0.83 +0.2 808,583 + PS417_03540 0.83 -0.7 808,584 - PS417_03540 0.84 +1.2 808,584 - PS417_03540 0.84 -2.1 808,584 - PS417_03540 0.84 -0.5 808,585 + PS417_03540 0.84 +0.0 808,586 - PS417_03540 0.84 -0.7 808,586 - PS417_03540 0.84 +1.3 808,586 - PS417_03540 0.84 -0.7 808,596 + PS417_03540 0.86 +1.9 808,596 + PS417_03540 0.86 +1.4 808,596 + PS417_03540 0.86 +2.5 808,629 + +0.5 808,629 + +1.5 808,629 + +0.3 808,630 - -1.9 808,630 - +0.6 808,631 + +0.1 808,632 - +0.2 808,669 + +0.5 808,669 + -0.0 808,772 + PS417_03545 0.13 -0.2 808,773 - PS417_03545 0.13 +0.5 808,773 - PS417_03545 0.13 -1.0 808,773 - PS417_03545 0.13 -0.8 808,870 + PS417_03545 0.25 -0.1 808,894 + PS417_03545 0.27 -0.3 808,895 - PS417_03545 0.28 +0.1 809,018 + +2.2
Or see this region's nucleotide sequence