Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02620 and PS417_02625 are separated by 332 nucleotides PS417_02625 and PS417_02630 are separated by 136 nucleotides PS417_02630 and PS417_02635 are separated by 3 nucleotides
PS417_02620: PS417_02620 - hypothetical protein, at 600,180 to 600,362
_02620
PS417_02625: PS417_02625 - azurin, at 600,695 to 601,141
_02625
PS417_02630: PS417_02630 - NAD synthetase, at 601,278 to 602,105
_02630
PS417_02635: PS417_02635 - nicotinate phosphoribosyltransferase, at 602,109 to 603,323
_02635
Position (kb) 601
602
603 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 600.347 kb on - strand at 600.347 kb on - strand at 600.350 kb on + strand at 600.350 kb on + strand at 600.351 kb on - strand at 600.351 kb on - strand at 600.375 kb on - strand at 600.424 kb on + strand at 600.467 kb on - strand at 600.539 kb on + strand at 600.553 kb on + strand at 600.554 kb on - strand at 600.554 kb on - strand at 600.554 kb on - strand at 600.565 kb on + strand at 600.565 kb on + strand at 600.566 kb on - strand at 600.566 kb on - strand at 600.625 kb on - strand at 601.077 kb on - strand at 601.139 kb on + strand at 601.139 kb on + strand at 601.140 kb on - strand at 601.334 kb on + strand at 601.393 kb on + strand, within PS417_02630 at 601.394 kb on - strand at 601.394 kb on - strand, within PS417_02630 at 601.646 kb on - strand, within PS417_02630 at 601.646 kb on - strand, within PS417_02630 at 602.133 kb on + strand at 602.315 kb on + strand, within PS417_02635 at 602.316 kb on - strand, within PS417_02635 at 602.379 kb on + strand, within PS417_02635 at 602.419 kb on + strand, within PS417_02635 at 602.498 kb on - strand, within PS417_02635 at 602.498 kb on - strand, within PS417_02635 at 602.746 kb on - strand, within PS417_02635 at 602.746 kb on - strand, within PS417_02635 at 602.866 kb on + strand, within PS417_02635 at 602.997 kb on + strand, within PS417_02635 at 602.998 kb on - strand, within PS417_02635 at 602.998 kb on - strand, within PS417_02635 at 603.028 kb on + strand, within PS417_02635
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 600,347 - -0.2 600,347 - +1.4 600,350 + -0.2 600,350 + +0.8 600,351 - +2.6 600,351 - -0.7 600,375 - -1.1 600,424 + +0.6 600,467 - +0.6 600,539 + -1.1 600,553 + +0.3 600,554 - +1.0 600,554 - -2.3 600,554 - +0.8 600,565 + +0.7 600,565 + +0.8 600,566 - -0.9 600,566 - -0.3 600,625 - -2.0 601,077 - +2.8 601,139 + +0.4 601,139 + +0.5 601,140 - -0.5 601,334 + +0.4 601,393 + PS417_02630 0.14 +1.0 601,394 - -0.5 601,394 - PS417_02630 0.14 -0.7 601,646 - PS417_02630 0.44 -1.9 601,646 - PS417_02630 0.44 -1.2 602,133 + -0.2 602,315 + PS417_02635 0.17 -2.6 602,316 - PS417_02635 0.17 +0.4 602,379 + PS417_02635 0.22 -0.1 602,419 + PS417_02635 0.26 +1.0 602,498 - PS417_02635 0.32 -0.6 602,498 - PS417_02635 0.32 -0.7 602,746 - PS417_02635 0.52 -0.7 602,746 - PS417_02635 0.52 -0.1 602,866 + PS417_02635 0.62 -0.3 602,997 + PS417_02635 0.73 +0.9 602,998 - PS417_02635 0.73 +0.4 602,998 - PS417_02635 0.73 +0.2 603,028 + PS417_02635 0.76 +0.0
Or see this region's nucleotide sequence