Strain Fitness in Pseudomonas simiae WCS417 around PS417_02630

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02620 and PS417_02625 are separated by 332 nucleotidesPS417_02625 and PS417_02630 are separated by 136 nucleotidesPS417_02630 and PS417_02635 are separated by 3 nucleotides PS417_02620: PS417_02620 - hypothetical protein, at 600,180 to 600,362 _02620 PS417_02625: PS417_02625 - azurin, at 600,695 to 601,141 _02625 PS417_02630: PS417_02630 - NAD synthetase, at 601,278 to 602,105 _02630 PS417_02635: PS417_02635 - nicotinate phosphoribosyltransferase, at 602,109 to 603,323 _02635 Position (kb) 601 602 603Strain fitness (log2 ratio) -2 -1 0 1 2 3at 600.347 kb on - strandat 600.347 kb on - strandat 600.350 kb on + strandat 600.350 kb on + strandat 600.351 kb on - strandat 600.351 kb on - strandat 600.375 kb on - strandat 600.424 kb on + strandat 600.467 kb on - strandat 600.539 kb on + strandat 600.553 kb on + strandat 600.554 kb on - strandat 600.554 kb on - strandat 600.554 kb on - strandat 600.565 kb on + strandat 600.565 kb on + strandat 600.566 kb on - strandat 600.566 kb on - strandat 600.625 kb on - strandat 601.077 kb on - strandat 601.139 kb on + strandat 601.139 kb on + strandat 601.140 kb on - strandat 601.334 kb on + strandat 601.393 kb on + strand, within PS417_02630at 601.394 kb on - strandat 601.394 kb on - strand, within PS417_02630at 601.646 kb on - strand, within PS417_02630at 601.646 kb on - strand, within PS417_02630at 602.133 kb on + strandat 602.315 kb on + strand, within PS417_02635at 602.316 kb on - strand, within PS417_02635at 602.379 kb on + strand, within PS417_02635at 602.419 kb on + strand, within PS417_02635at 602.498 kb on - strand, within PS417_02635at 602.498 kb on - strand, within PS417_02635at 602.746 kb on - strand, within PS417_02635at 602.746 kb on - strand, within PS417_02635at 602.866 kb on + strand, within PS417_02635at 602.997 kb on + strand, within PS417_02635at 602.998 kb on - strand, within PS417_02635at 602.998 kb on - strand, within PS417_02635at 603.028 kb on + strand, within PS417_02635

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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600,347 - -0.2
600,347 - +1.4
600,350 + -0.2
600,350 + +0.8
600,351 - +2.6
600,351 - -0.7
600,375 - -1.1
600,424 + +0.6
600,467 - +0.6
600,539 + -1.1
600,553 + +0.3
600,554 - +1.0
600,554 - -2.3
600,554 - +0.8
600,565 + +0.7
600,565 + +0.8
600,566 - -0.9
600,566 - -0.3
600,625 - -2.0
601,077 - +2.8
601,139 + +0.4
601,139 + +0.5
601,140 - -0.5
601,334 + +0.4
601,393 + PS417_02630 0.14 +1.0
601,394 - -0.5
601,394 - PS417_02630 0.14 -0.7
601,646 - PS417_02630 0.44 -1.9
601,646 - PS417_02630 0.44 -1.2
602,133 + -0.2
602,315 + PS417_02635 0.17 -2.6
602,316 - PS417_02635 0.17 +0.4
602,379 + PS417_02635 0.22 -0.1
602,419 + PS417_02635 0.26 +1.0
602,498 - PS417_02635 0.32 -0.6
602,498 - PS417_02635 0.32 -0.7
602,746 - PS417_02635 0.52 -0.7
602,746 - PS417_02635 0.52 -0.1
602,866 + PS417_02635 0.62 -0.3
602,997 + PS417_02635 0.73 +0.9
602,998 - PS417_02635 0.73 +0.4
602,998 - PS417_02635 0.73 +0.2
603,028 + PS417_02635 0.76 +0.0

Or see this region's nucleotide sequence