Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22170 and PS417_22175 are separated by 5 nucleotides PS417_22175 and PS417_22180 are separated by 178 nucleotides PS417_22180 and PS417_22185 are separated by 139 nucleotides PS417_22185 and PS417_22190 are separated by 207 nucleotides
PS417_22170: PS417_22170 - acetyltransferase, at 4,803,336 to 4,803,737
_22170
PS417_22175: PS417_22175 - amino acid transporter LysE, at 4,803,743 to 4,804,342
_22175
PS417_22180: PS417_22180 - superoxide dismutase, at 4,804,521 to 4,805,117
_22180
PS417_22185: PS417_22185 - hypothetical protein, at 4,805,257 to 4,805,442
_22185
PS417_22190: PS417_22190 - diguanylate cyclase, at 4,805,650 to 4,807,701
_22190
Position (kb) 4804
4805
4806 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4803.654 kb on + strand at 4803.706 kb on + strand at 4803.706 kb on + strand at 4803.707 kb on - strand at 4803.736 kb on - strand at 4803.742 kb on + strand at 4803.743 kb on - strand at 4803.820 kb on - strand, within PS417_22175 at 4804.178 kb on + strand, within PS417_22175 at 4804.414 kb on + strand at 4805.116 kb on - strand at 4805.415 kb on + strand, within PS417_22185 at 4805.483 kb on + strand at 4805.484 kb on - strand at 4805.522 kb on - strand at 4805.614 kb on - strand at 4805.761 kb on + strand at 4806.056 kb on - strand, within PS417_22190 at 4806.094 kb on + strand, within PS417_22190 at 4806.094 kb on + strand, within PS417_22190 at 4806.094 kb on + strand, within PS417_22190 at 4806.095 kb on - strand, within PS417_22190
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,803,654 + +1.8 4,803,706 + -0.9 4,803,706 + +0.8 4,803,707 - -0.2 4,803,736 - -0.3 4,803,742 + -0.3 4,803,743 - -0.2 4,803,820 - PS417_22175 0.13 +1.2 4,804,178 + PS417_22175 0.72 +1.8 4,804,414 + +0.5 4,805,116 - -0.3 4,805,415 + PS417_22185 0.85 -0.5 4,805,483 + +4.5 4,805,484 - -1.2 4,805,522 - +1.0 4,805,614 - -1.3 4,805,761 + +0.3 4,806,056 - PS417_22190 0.20 -0.6 4,806,094 + PS417_22190 0.22 -0.1 4,806,094 + PS417_22190 0.22 +0.3 4,806,094 + PS417_22190 0.22 +0.1 4,806,095 - PS417_22190 0.22 -0.2
Or see this region's nucleotide sequence