Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20815 and PS417_20825 are separated by 321 nucleotides PS417_20825 and PS417_20830 overlap by 87 nucleotides PS417_20830 and PS417_20835 are separated by 102 nucleotides
PS417_20815: PS417_20815 - DNA polymerase III subunit gamma/tau, at 4,520,570 to 4,522,624
_20815
PS417_20825: PS417_20825 - drug:proton antiporter, at 4,522,946 to 4,523,317
_20825
PS417_20830: PS417_20830 - transporter, at 4,523,231 to 4,524,190
_20830
PS417_20835: PS417_20835 - LysR family transcriptional regulator, at 4,524,293 to 4,525,156
_20835
Position (kb) 4523
4524
4525 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4522.712 kb on + strand at 4522.712 kb on + strand at 4522.757 kb on + strand at 4522.780 kb on + strand at 4522.781 kb on - strand at 4522.781 kb on - strand at 4522.822 kb on + strand at 4522.903 kb on + strand at 4522.905 kb on + strand at 4522.905 kb on + strand at 4522.906 kb on - strand at 4522.949 kb on + strand at 4522.949 kb on + strand at 4522.949 kb on + strand at 4522.950 kb on - strand at 4522.950 kb on - strand at 4522.950 kb on - strand at 4522.950 kb on - strand at 4522.950 kb on - strand at 4522.965 kb on - strand at 4522.965 kb on - strand at 4522.976 kb on + strand at 4522.976 kb on + strand at 4522.977 kb on - strand at 4523.009 kb on + strand, within PS417_20825 at 4523.009 kb on + strand, within PS417_20825 at 4523.010 kb on - strand, within PS417_20825 at 4523.010 kb on - strand at 4523.448 kb on + strand at 4523.493 kb on + strand, within PS417_20830 at 4523.494 kb on - strand, within PS417_20830 at 4523.509 kb on - strand, within PS417_20830 at 4523.637 kb on + strand, within PS417_20830 at 4523.637 kb on + strand, within PS417_20830 at 4523.637 kb on + strand, within PS417_20830 at 4523.637 kb on + strand, within PS417_20830 at 4523.638 kb on - strand, within PS417_20830 at 4523.638 kb on - strand, within PS417_20830 at 4523.638 kb on - strand, within PS417_20830 at 4523.694 kb on + strand, within PS417_20830 at 4523.694 kb on + strand, within PS417_20830 at 4523.987 kb on + strand, within PS417_20830 at 4524.159 kb on - strand at 4524.163 kb on + strand at 4524.164 kb on - strand at 4524.164 kb on - strand at 4524.164 kb on - strand at 4524.164 kb on - strand at 4524.256 kb on - strand at 4524.491 kb on + strand, within PS417_20835 at 4524.502 kb on + strand, within PS417_20835 at 4524.503 kb on - strand, within PS417_20835 at 4524.626 kb on + strand, within PS417_20835 at 4524.786 kb on + strand, within PS417_20835 at 4524.936 kb on - strand, within PS417_20835 at 4524.936 kb on - strand, within PS417_20835 at 4525.135 kb on - strand at 4525.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,522,712 + -1.2 4,522,712 + +0.3 4,522,757 + -0.2 4,522,780 + -2.0 4,522,781 - +0.3 4,522,781 - -0.3 4,522,822 + -0.1 4,522,903 + -0.5 4,522,905 + +0.5 4,522,905 + +1.4 4,522,906 - -0.1 4,522,949 + +0.1 4,522,949 + -0.0 4,522,949 + -1.0 4,522,950 - +0.2 4,522,950 - +0.7 4,522,950 - -0.7 4,522,950 - -1.2 4,522,950 - -0.3 4,522,965 - -0.6 4,522,965 - -0.2 4,522,976 + +0.8 4,522,976 + +0.3 4,522,977 - +0.3 4,523,009 + PS417_20825 0.17 +1.4 4,523,009 + PS417_20825 0.17 +0.1 4,523,010 - PS417_20825 0.17 +0.3 4,523,010 - +0.8 4,523,448 + +2.4 4,523,493 + PS417_20830 0.27 +1.3 4,523,494 - PS417_20830 0.27 +0.3 4,523,509 - PS417_20830 0.29 +3.9 4,523,637 + PS417_20830 0.42 -1.5 4,523,637 + PS417_20830 0.42 +2.8 4,523,637 + PS417_20830 0.42 +0.5 4,523,637 + PS417_20830 0.42 -0.4 4,523,638 - PS417_20830 0.42 -0.0 4,523,638 - PS417_20830 0.42 +0.3 4,523,638 - PS417_20830 0.42 -0.7 4,523,694 + PS417_20830 0.48 +0.4 4,523,694 + PS417_20830 0.48 -0.2 4,523,987 + PS417_20830 0.79 +0.1 4,524,159 - -0.9 4,524,163 + -0.2 4,524,164 - +2.1 4,524,164 - -1.7 4,524,164 - +0.2 4,524,164 - +0.3 4,524,256 - -1.0 4,524,491 + PS417_20835 0.23 -0.5 4,524,502 + PS417_20835 0.24 +0.6 4,524,503 - PS417_20835 0.24 -0.0 4,524,626 + PS417_20835 0.39 +1.2 4,524,786 + PS417_20835 0.57 -0.3 4,524,936 - PS417_20835 0.74 +0.8 4,524,936 - PS417_20835 0.74 +0.2 4,525,135 - -1.0 4,525,135 - -0.5
Or see this region's nucleotide sequence