Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19350 and PS417_19355 are separated by 101 nucleotides PS417_19355 and PS417_19360 are separated by 22 nucleotides PS417_19360 and PS417_19365 overlap by 4 nucleotides PS417_19365 and PS417_19370 are separated by 1 nucleotides
PS417_19350: PS417_19350 - GTP cyclohydrolase, at 4,194,977 to 4,195,522
_19350
PS417_19355: PS417_19355 - glutaredoxin, at 4,195,624 to 4,195,995
_19355
PS417_19360: PS417_19360 - hypothetical protein, at 4,196,018 to 4,196,338
_19360
PS417_19365: PS417_19365 - ABC transporter substrate-binding protein, at 4,196,335 to 4,197,660
_19365
PS417_19370: PS417_19370 - citrate transporter, at 4,197,662 to 4,198,954
_19370
Position (kb) 4196
4197
4198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4195.520 kb on + strand at 4195.584 kb on + strand at 4195.585 kb on - strand at 4195.912 kb on - strand, within PS417_19355 at 4195.942 kb on + strand, within PS417_19355 at 4195.942 kb on + strand at 4195.942 kb on + strand, within PS417_19355 at 4195.942 kb on + strand, within PS417_19355 at 4195.942 kb on + strand, within PS417_19355 at 4195.943 kb on - strand, within PS417_19355 at 4195.943 kb on - strand at 4195.943 kb on - strand at 4195.967 kb on - strand at 4196.002 kb on + strand at 4196.002 kb on + strand at 4196.020 kb on - strand at 4196.020 kb on - strand at 4196.250 kb on + strand, within PS417_19360 at 4196.281 kb on + strand, within PS417_19360 at 4196.282 kb on - strand, within PS417_19360 at 4196.405 kb on - strand at 4196.611 kb on + strand, within PS417_19365 at 4196.657 kb on - strand, within PS417_19365 at 4196.784 kb on + strand at 4196.840 kb on + strand, within PS417_19365 at 4196.841 kb on - strand, within PS417_19365 at 4196.865 kb on - strand, within PS417_19365 at 4196.865 kb on - strand, within PS417_19365 at 4196.868 kb on + strand, within PS417_19365 at 4196.868 kb on + strand, within PS417_19365 at 4196.868 kb on + strand, within PS417_19365 at 4196.868 kb on + strand, within PS417_19365 at 4196.869 kb on - strand at 4196.869 kb on - strand, within PS417_19365 at 4196.926 kb on - strand, within PS417_19365 at 4197.352 kb on - strand, within PS417_19365 at 4197.352 kb on - strand, within PS417_19365 at 4197.352 kb on - strand, within PS417_19365 at 4197.356 kb on - strand, within PS417_19365 at 4197.402 kb on + strand, within PS417_19365 at 4197.402 kb on + strand, within PS417_19365 at 4197.913 kb on - strand, within PS417_19370 at 4198.152 kb on + strand, within PS417_19370 at 4198.289 kb on - strand, within PS417_19370 at 4198.550 kb on - strand, within PS417_19370 at 4198.569 kb on + strand, within PS417_19370 at 4198.570 kb on - strand, within PS417_19370
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,195,520 + -0.8 4,195,584 + -0.5 4,195,585 - -0.6 4,195,912 - PS417_19355 0.77 -0.9 4,195,942 + PS417_19355 0.85 +0.4 4,195,942 + -0.2 4,195,942 + PS417_19355 0.85 -0.3 4,195,942 + PS417_19355 0.85 +0.9 4,195,942 + PS417_19355 0.85 -0.4 4,195,943 - PS417_19355 0.86 -0.1 4,195,943 - +0.8 4,195,943 - +1.2 4,195,967 - -0.2 4,196,002 + -0.0 4,196,002 + -0.6 4,196,020 - +0.1 4,196,020 - +0.8 4,196,250 + PS417_19360 0.72 -1.7 4,196,281 + PS417_19360 0.82 -1.2 4,196,282 - PS417_19360 0.82 -0.5 4,196,405 - -1.5 4,196,611 + PS417_19365 0.21 -0.4 4,196,657 - PS417_19365 0.24 +0.1 4,196,784 + -0.8 4,196,840 + PS417_19365 0.38 +0.2 4,196,841 - PS417_19365 0.38 +1.2 4,196,865 - PS417_19365 0.40 +0.6 4,196,865 - PS417_19365 0.40 +0.8 4,196,868 + PS417_19365 0.40 +0.1 4,196,868 + PS417_19365 0.40 -0.6 4,196,868 + PS417_19365 0.40 +0.5 4,196,868 + PS417_19365 0.40 -0.8 4,196,869 - +0.8 4,196,869 - PS417_19365 0.40 -0.0 4,196,926 - PS417_19365 0.45 -0.1 4,197,352 - PS417_19365 0.77 -0.2 4,197,352 - PS417_19365 0.77 -0.4 4,197,352 - PS417_19365 0.77 +0.5 4,197,356 - PS417_19365 0.77 +1.1 4,197,402 + PS417_19365 0.80 +2.6 4,197,402 + PS417_19365 0.80 +1.4 4,197,913 - PS417_19370 0.19 +0.5 4,198,152 + PS417_19370 0.38 -0.6 4,198,289 - PS417_19370 0.48 +0.4 4,198,550 - PS417_19370 0.69 +0.2 4,198,569 + PS417_19370 0.70 +1.4 4,198,570 - PS417_19370 0.70 -1.8
Or see this region's nucleotide sequence