Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01080 and PS417_01085 are separated by 24 nucleotides PS417_01085 and PS417_01090 are separated by 186 nucleotides
PS417_01080: PS417_01080 - acyl-CoA dehydrogenase, at 236,527 to 237,720
_01080
PS417_01085: PS417_01085 - monooxygenase, at 237,745 to 238,986
_01085
PS417_01090: PS417_01090 - hypothetical protein, at 239,173 to 239,937
_01090
Position (kb) 237
238
239 Strain fitness (log2 ratio) -2
-1
0
1
2 at 237.031 kb on - strand, within PS417_01080 at 237.031 kb on - strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.254 kb on + strand, within PS417_01080 at 237.438 kb on - strand, within PS417_01080 at 237.838 kb on + strand at 238.103 kb on + strand, within PS417_01085 at 238.103 kb on + strand, within PS417_01085 at 238.103 kb on + strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.163 kb on - strand, within PS417_01085 at 238.429 kb on + strand at 238.475 kb on + strand, within PS417_01085 at 238.475 kb on + strand, within PS417_01085 at 238.499 kb on + strand, within PS417_01085 at 238.499 kb on + strand at 238.499 kb on + strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085 at 238.758 kb on - strand, within PS417_01085 at 238.981 kb on - strand at 238.981 kb on - strand at 239.011 kb on - strand at 239.011 kb on - strand at 239.072 kb on - strand at 239.213 kb on + strand at 239.213 kb on + strand at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.377 kb on + strand, within PS417_01090 at 239.378 kb on - strand, within PS417_01090 at 239.591 kb on + strand, within PS417_01090 at 239.592 kb on - strand, within PS417_01090 at 239.635 kb on + strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.687 kb on + strand, within PS417_01090 at 239.838 kb on - strand, within PS417_01090 at 239.938 kb on - strand at 239.941 kb on + strand at 239.941 kb on + strand at 239.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 237,031 - PS417_01080 0.42 +0.0 237,031 - PS417_01080 0.42 -1.2 237,236 + PS417_01080 0.59 +1.8 237,236 + PS417_01080 0.59 -0.3 237,236 + PS417_01080 0.59 -1.4 237,254 + PS417_01080 0.61 -1.0 237,438 - PS417_01080 0.76 +1.8 237,838 + +0.2 238,103 + PS417_01085 0.29 -0.8 238,103 + PS417_01085 0.29 -1.2 238,103 + PS417_01085 0.29 +0.3 238,104 - PS417_01085 0.29 -0.8 238,104 - PS417_01085 0.29 +0.2 238,104 - PS417_01085 0.29 -0.7 238,104 - PS417_01085 0.29 +1.8 238,163 - PS417_01085 0.34 -0.3 238,429 + +1.8 238,475 + PS417_01085 0.59 +0.4 238,475 + PS417_01085 0.59 -1.6 238,499 + PS417_01085 0.61 -1.6 238,499 + +0.8 238,499 + PS417_01085 0.61 -0.1 238,500 - PS417_01085 0.61 -1.0 238,500 - PS417_01085 0.61 +0.2 238,758 - PS417_01085 0.82 +0.5 238,981 - -0.2 238,981 - -0.0 239,011 - +0.8 239,011 - -1.1 239,072 - -0.2 239,213 + +1.0 239,213 + -0.7 239,318 + PS417_01090 0.19 -0.9 239,318 + PS417_01090 0.19 +0.8 239,318 + PS417_01090 0.19 -0.9 239,377 + PS417_01090 0.27 +1.1 239,378 - PS417_01090 0.27 -1.0 239,591 + PS417_01090 0.55 -0.5 239,592 - PS417_01090 0.55 +0.2 239,635 + PS417_01090 0.60 -1.1 239,636 - PS417_01090 0.61 +0.8 239,636 - PS417_01090 0.61 -0.6 239,636 - PS417_01090 0.61 -1.1 239,636 - PS417_01090 0.61 -1.0 239,687 + PS417_01090 0.67 +1.8 239,838 - PS417_01090 0.87 +0.2 239,938 - -0.3 239,941 + -2.3 239,941 + -0.2 239,942 - -0.2
Or see this region's nucleotide sequence