Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00820 and PS417_00825 are separated by 890 nucleotides PS417_00825 and PS417_00830 are separated by 5 nucleotides
PS417_00820: PS417_00820 - hypothetical protein, at 181,253 to 181,504
_00820
PS417_00825: PS417_00825 - recombinase RecF, at 182,395 to 183,564
_00825
PS417_00830: PS417_00830 - hypothetical protein, at 183,570 to 184,313
_00830
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 181.461 kb on - strand, within PS417_00820 at 181.478 kb on + strand, within PS417_00820 at 181.498 kb on + strand at 181.499 kb on - strand at 181.562 kb on + strand at 181.562 kb on + strand at 181.593 kb on + strand at 181.745 kb on + strand at 181.785 kb on + strand at 181.785 kb on + strand at 181.785 kb on + strand at 181.786 kb on - strand at 181.887 kb on + strand at 181.942 kb on + strand at 181.942 kb on + strand at 181.942 kb on + strand at 181.943 kb on - strand at 181.943 kb on - strand at 181.943 kb on - strand at 182.021 kb on + strand at 182.095 kb on - strand at 182.095 kb on - strand at 182.127 kb on + strand at 182.145 kb on + strand at 182.154 kb on - strand at 182.154 kb on - strand at 182.154 kb on - strand at 182.230 kb on - strand at 182.230 kb on - strand at 182.230 kb on - strand at 182.230 kb on - strand at 182.306 kb on + strand at 182.306 kb on + strand at 182.328 kb on - strand at 182.362 kb on + strand at 182.362 kb on + strand at 182.363 kb on - strand at 182.363 kb on - strand at 182.389 kb on - strand at 182.639 kb on - strand, within PS417_00825 at 182.695 kb on + strand, within PS417_00825 at 182.736 kb on + strand, within PS417_00825 at 183.253 kb on - strand, within PS417_00825 at 183.683 kb on - strand, within PS417_00830 at 183.695 kb on - strand, within PS417_00830 at 183.697 kb on + strand, within PS417_00830 at 183.737 kb on + strand at 184.121 kb on - strand, within PS417_00830 at 184.121 kb on - strand, within PS417_00830 at 184.261 kb on - strand at 184.261 kb on - strand at 184.355 kb on + strand at 184.355 kb on + strand at 184.356 kb on - strand at 184.359 kb on + strand at 184.382 kb on - strand at 184.501 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 181,461 - PS417_00820 0.83 +0.4 181,478 + PS417_00820 0.89 +0.9 181,498 + +0.8 181,499 - +0.2 181,562 + +0.2 181,562 + -2.2 181,593 + -1.0 181,745 + +0.8 181,785 + -0.5 181,785 + -0.7 181,785 + +1.8 181,786 - +0.3 181,887 + +0.0 181,942 + -1.9 181,942 + -0.1 181,942 + -1.2 181,943 - -1.8 181,943 - +0.5 181,943 - +1.8 182,021 + -0.7 182,095 - -0.2 182,095 - -0.4 182,127 + -0.8 182,145 + -0.3 182,154 - -0.5 182,154 - +0.2 182,154 - -1.1 182,230 - -0.4 182,230 - -0.2 182,230 - -1.5 182,230 - -0.1 182,306 + -1.9 182,306 + -0.1 182,328 - -0.4 182,362 + +3.7 182,362 + -1.0 182,363 - +0.5 182,363 - +1.8 182,389 - -0.4 182,639 - PS417_00825 0.21 +0.2 182,695 + PS417_00825 0.26 -2.1 182,736 + PS417_00825 0.29 -0.1 183,253 - PS417_00825 0.73 -1.0 183,683 - PS417_00830 0.15 -0.4 183,695 - PS417_00830 0.17 -0.5 183,697 + PS417_00830 0.17 -0.8 183,737 + +0.2 184,121 - PS417_00830 0.74 -0.2 184,121 - PS417_00830 0.74 +0.8 184,261 - +0.2 184,261 - -0.6 184,355 + +0.8 184,355 + -1.2 184,356 - +0.5 184,359 + +0.5 184,382 - -0.0 184,501 + +0.1
Or see this region's nucleotide sequence