Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00495 and PS417_00500 are separated by 54 nucleotides PS417_00500 and PS417_00505 are separated by 72 nucleotides
PS417_00495: PS417_00495 - ABC transporter permease, at 97,787 to 98,935
_00495
PS417_00500: PS417_00500 - membrane protein, at 98,990 to 100,021
_00500
PS417_00505: PS417_00505 - peptidase M16, at 100,094 to 101,476
_00505
Position (kb) 98
99
100
101 Strain fitness (log2 ratio) -1
0
1 at 98.045 kb on + strand, within PS417_00495 at 98.142 kb on - strand, within PS417_00495 at 98.397 kb on - strand, within PS417_00495 at 98.766 kb on - strand, within PS417_00495 at 98.799 kb on + strand, within PS417_00495 at 98.800 kb on - strand, within PS417_00495 at 98.800 kb on - strand, within PS417_00495 at 98.867 kb on - strand at 98.936 kb on - strand at 98.969 kb on + strand at 98.969 kb on + strand at 98.973 kb on + strand at 98.973 kb on + strand at 98.974 kb on - strand at 98.974 kb on - strand at 98.974 kb on - strand at 98.976 kb on + strand at 98.977 kb on - strand at 98.991 kb on + strand at 98.992 kb on - strand at 98.992 kb on - strand at 99.158 kb on - strand, within PS417_00500 at 99.208 kb on - strand, within PS417_00500 at 99.208 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.631 kb on - strand, within PS417_00500 at 99.634 kb on - strand, within PS417_00500 at 100.064 kb on + strand at 100.096 kb on - strand at 100.113 kb on + strand at 100.133 kb on + strand at 100.133 kb on + strand at 100.133 kb on + strand at 100.185 kb on + strand at 100.185 kb on + strand at 100.336 kb on - strand, within PS417_00505 at 100.463 kb on + strand, within PS417_00505 at 100.561 kb on - strand, within PS417_00505 at 100.561 kb on - strand, within PS417_00505 at 100.612 kb on - strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.630 kb on - strand, within PS417_00505
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 98,045 + PS417_00495 0.22 -0.9 98,142 - PS417_00495 0.31 +0.5 98,397 - PS417_00495 0.53 +0.8 98,766 - PS417_00495 0.85 -1.1 98,799 + PS417_00495 0.88 -0.9 98,800 - PS417_00495 0.88 +1.5 98,800 - PS417_00495 0.88 +0.5 98,867 - -0.4 98,936 - +0.3 98,969 + -0.7 98,969 + +0.2 98,973 + +0.1 98,973 + +0.5 98,974 - +0.4 98,974 - +1.0 98,974 - -0.9 98,976 + +0.9 98,977 - +1.5 98,991 + -1.0 98,992 - +1.2 98,992 - -0.0 99,158 - PS417_00500 0.16 -0.9 99,208 - PS417_00500 0.21 -0.6 99,208 - PS417_00500 0.21 +0.1 99,517 - PS417_00500 0.51 -0.2 99,517 - PS417_00500 0.51 -0.4 99,517 - PS417_00500 0.51 -0.3 99,631 - PS417_00500 0.62 -0.9 99,634 - PS417_00500 0.62 +0.3 100,064 + -0.5 100,096 - -0.9 100,113 + -0.7 100,133 + -0.3 100,133 + -0.0 100,133 + +1.5 100,185 + +1.5 100,185 + -0.1 100,336 - PS417_00505 0.17 -0.8 100,463 + PS417_00505 0.27 -0.1 100,561 - PS417_00505 0.34 -0.2 100,561 - PS417_00505 0.34 +0.9 100,612 - PS417_00505 0.37 +0.3 100,629 + PS417_00505 0.39 -0.2 100,629 + PS417_00505 0.39 -0.2 100,630 - PS417_00505 0.39 +0.2
Or see this region's nucleotide sequence