Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04170 and PS417_04175 are separated by 17 nucleotides PS417_04175 and PS417_04180 are separated by 158 nucleotides PS417_04180 and PS417_04185 are separated by 10 nucleotides PS417_04185 and PS417_04190 are separated by 152 nucleotides
PS417_04170: PS417_04170 - stringent starvation protein A, at 936,136 to 936,753
_04170
PS417_04175: PS417_04175 - peptidase, at 936,771 to 937,190
_04175
PS417_04180: PS417_04180 - GntR family transcriptional regulator, at 937,349 to 938,098
_04180
PS417_04185: PS417_04185 - hypothetical protein, at 938,109 to 938,294
_04185
PS417_04190: PS417_04190 - phosphatidylcholine-hydrolyzing phospholipase, at 938,447 to 939,604
_04190
Position (kb) 937
938
939 Strain fitness (log2 ratio) -2
-1
0
1
2 at 936.506 kb on + strand, within PS417_04170 at 936.506 kb on + strand, within PS417_04170 at 936.507 kb on - strand, within PS417_04170 at 936.507 kb on - strand, within PS417_04170 at 936.683 kb on - strand, within PS417_04170 at 936.683 kb on - strand, within PS417_04170 at 936.758 kb on + strand at 936.789 kb on + strand at 937.035 kb on + strand, within PS417_04175 at 937.035 kb on + strand, within PS417_04175 at 937.035 kb on + strand, within PS417_04175 at 937.035 kb on + strand, within PS417_04175 at 937.036 kb on - strand, within PS417_04175 at 937.036 kb on - strand, within PS417_04175 at 937.294 kb on - strand at 937.309 kb on + strand at 937.310 kb on - strand at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 938.155 kb on + strand, within PS417_04185 at 938.185 kb on - strand, within PS417_04185 at 938.207 kb on - strand, within PS417_04185 at 938.207 kb on - strand, within PS417_04185 at 938.298 kb on + strand at 938.298 kb on + strand at 938.298 kb on + strand at 938.299 kb on - strand at 938.324 kb on + strand at 938.325 kb on - strand at 938.325 kb on - strand at 938.461 kb on + strand at 938.473 kb on - strand at 938.473 kb on - strand at 938.491 kb on - strand at 938.491 kb on - strand at 938.491 kb on - strand at 938.494 kb on + strand at 938.494 kb on + strand at 938.551 kb on + strand at 938.637 kb on + strand, within PS417_04190 at 938.637 kb on + strand, within PS417_04190 at 938.637 kb on + strand, within PS417_04190 at 938.638 kb on - strand, within PS417_04190 at 938.638 kb on - strand, within PS417_04190 at 938.674 kb on + strand, within PS417_04190 at 938.912 kb on + strand, within PS417_04190 at 938.977 kb on - strand, within PS417_04190 at 939.057 kb on + strand, within PS417_04190
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 936,506 + PS417_04170 0.60 -1.5 936,506 + PS417_04170 0.60 +0.0 936,507 - PS417_04170 0.60 -1.8 936,507 - PS417_04170 0.60 -0.2 936,683 - PS417_04170 0.89 -2.2 936,683 - PS417_04170 0.89 -1.5 936,758 + +0.0 936,789 + -0.6 937,035 + PS417_04175 0.63 -0.3 937,035 + PS417_04175 0.63 +0.7 937,035 + PS417_04175 0.63 +0.0 937,035 + PS417_04175 0.63 +1.7 937,036 - PS417_04175 0.63 +0.2 937,036 - PS417_04175 0.63 +2.3 937,294 - -0.6 937,309 + -0.7 937,310 - -0.1 937,944 - PS417_04180 0.79 +2.1 937,944 - PS417_04180 0.79 +0.4 937,944 - PS417_04180 0.79 -0.2 937,944 - PS417_04180 0.79 -0.5 938,155 + PS417_04185 0.25 -0.3 938,185 - PS417_04185 0.41 +0.8 938,207 - PS417_04185 0.53 +0.4 938,207 - PS417_04185 0.53 +1.5 938,298 + +0.0 938,298 + +1.2 938,298 + -0.8 938,299 - +0.1 938,324 + -0.2 938,325 - -0.2 938,325 - -1.0 938,461 + +0.3 938,473 - +1.5 938,473 - -0.5 938,491 - +0.1 938,491 - +0.2 938,491 - -0.2 938,494 + -0.5 938,494 + +1.1 938,551 + -0.4 938,637 + PS417_04190 0.16 +1.8 938,637 + PS417_04190 0.16 -1.2 938,637 + PS417_04190 0.16 -0.0 938,638 - PS417_04190 0.16 -1.2 938,638 - PS417_04190 0.16 +1.5 938,674 + PS417_04190 0.20 +0.1 938,912 + PS417_04190 0.40 -0.5 938,977 - PS417_04190 0.46 +0.2 939,057 + PS417_04190 0.53 -0.3
Or see this region's nucleotide sequence