Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03150 and PS417_03155 are separated by 145 nucleotides PS417_03155 and PS417_03160 overlap by 4 nucleotides PS417_03160 and PS417_03165 are separated by 66 nucleotides PS417_03165 and PS417_03170 are separated by 147 nucleotides PS417_03170 and PS417_03175 are separated by 85 nucleotides
PS417_03150: PS417_03150 - kinase, at 723,269 to 724,165
_03150
PS417_03155: PS417_03155 - transcriptional regulator, at 724,311 to 724,712
_03155
PS417_03160: PS417_03160 - metal ABC transporter ATPase, at 724,709 to 726,910
_03160
PS417_03165: PS417_03165 - hypothetical protein, at 726,977 to 727,357
_03165
PS417_03170: PS417_03170 - copper resistance protein CopZ, at 727,505 to 727,702
_03170
PS417_03175: PS417_03175 - major facilitator transporter, at 727,788 to 728,981
_03175
Position (kb) 724
725
726
727 Strain fitness (log2 ratio) -2
-1
0
1
2 at 723.838 kb on - strand, within PS417_03150 at 723.903 kb on - strand, within PS417_03150 at 723.966 kb on - strand, within PS417_03150 at 723.997 kb on - strand, within PS417_03150 at 723.997 kb on - strand, within PS417_03150 at 724.294 kb on + strand at 724.566 kb on - strand, within PS417_03155 at 724.600 kb on - strand, within PS417_03155 at 724.654 kb on + strand, within PS417_03155 at 724.654 kb on + strand, within PS417_03155 at 724.860 kb on + strand at 724.860 kb on + strand at 724.899 kb on + strand at 724.900 kb on - strand at 725.762 kb on - strand, within PS417_03160 at 725.762 kb on - strand, within PS417_03160 at 726.402 kb on + strand, within PS417_03160 at 726.403 kb on - strand, within PS417_03160 at 726.403 kb on - strand, within PS417_03160 at 726.406 kb on + strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.493 kb on + strand, within PS417_03160 at 726.495 kb on + strand, within PS417_03160 at 726.495 kb on + strand, within PS417_03160 at 726.496 kb on - strand, within PS417_03160 at 726.978 kb on + strand at 726.979 kb on - strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.030 kb on + strand, within PS417_03165 at 727.044 kb on - strand, within PS417_03165 at 727.044 kb on - strand, within PS417_03165 at 727.063 kb on + strand, within PS417_03165 at 727.215 kb on + strand, within PS417_03165 at 727.279 kb on - strand, within PS417_03165 at 727.418 kb on + strand at 727.683 kb on - strand at 727.713 kb on + strand at 727.801 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 723,838 - PS417_03150 0.63 +0.2 723,903 - PS417_03150 0.71 -0.4 723,966 - PS417_03150 0.78 -0.5 723,997 - PS417_03150 0.81 -0.3 723,997 - PS417_03150 0.81 -0.9 724,294 + +0.7 724,566 - PS417_03155 0.63 +0.0 724,600 - PS417_03155 0.72 -0.5 724,654 + PS417_03155 0.85 -0.3 724,654 + PS417_03155 0.85 -0.0 724,860 + -0.5 724,860 + +0.1 724,899 + +0.0 724,900 - -1.3 725,762 - PS417_03160 0.48 +0.5 725,762 - PS417_03160 0.48 -1.0 726,402 + PS417_03160 0.77 -0.6 726,403 - PS417_03160 0.77 -1.8 726,403 - PS417_03160 0.77 +0.1 726,406 + PS417_03160 0.77 -2.0 726,407 - PS417_03160 0.77 +0.2 726,407 - PS417_03160 0.77 +0.5 726,407 - PS417_03160 0.77 -0.8 726,407 - PS417_03160 0.77 -0.1 726,493 + PS417_03160 0.81 -0.9 726,495 + PS417_03160 0.81 -2.4 726,495 + PS417_03160 0.81 -0.5 726,496 - PS417_03160 0.81 +0.1 726,978 + +2.1 726,979 - -1.5 727,005 + -0.1 727,005 + -0.5 727,005 + -0.9 727,005 + -0.5 727,005 + +0.5 727,006 - +0.5 727,006 - +0.2 727,006 - -0.1 727,006 - -0.2 727,030 + PS417_03165 0.14 -0.5 727,044 - PS417_03165 0.18 -0.5 727,044 - PS417_03165 0.18 +0.4 727,063 + PS417_03165 0.23 +1.5 727,215 + PS417_03165 0.62 -0.7 727,279 - PS417_03165 0.79 -0.2 727,418 + -0.5 727,683 - -0.0 727,713 + +0.2 727,801 + -0.6
Or see this region's nucleotide sequence