Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02865 and PS417_02870 are separated by 115 nucleotides PS417_02870 and PS417_02875 are separated by 93 nucleotides PS417_02875 and PS417_02880 are separated by 11 nucleotides
PS417_02865: PS417_02865 - peptidase, at 654,601 to 655,983
_02865
PS417_02870: PS417_02870 - TonB-dependent receptor, at 656,099 to 658,168
_02870
PS417_02875: PS417_02875 - hypothetical protein, at 658,262 to 658,651
_02875
PS417_02880: PS417_02880 - copper chaperone, at 658,663 to 659,145
_02880
Position (kb) 656
657
658
659 Strain fitness (log2 ratio) -1
0
1
2 at 655.329 kb on - strand, within PS417_02865 at 655.619 kb on + strand, within PS417_02865 at 655.739 kb on + strand at 655.740 kb on - strand, within PS417_02865 at 655.842 kb on - strand, within PS417_02865 at 655.874 kb on + strand at 655.875 kb on - strand at 656.415 kb on + strand, within PS417_02870 at 656.653 kb on - strand, within PS417_02870 at 656.826 kb on + strand, within PS417_02870 at 657.018 kb on + strand, within PS417_02870 at 657.045 kb on + strand, within PS417_02870 at 657.045 kb on + strand, within PS417_02870 at 657.046 kb on - strand, within PS417_02870 at 657.087 kb on + strand, within PS417_02870 at 657.088 kb on - strand, within PS417_02870 at 657.088 kb on - strand, within PS417_02870 at 657.294 kb on + strand, within PS417_02870 at 657.301 kb on - strand, within PS417_02870 at 657.304 kb on - strand, within PS417_02870 at 657.304 kb on - strand, within PS417_02870 at 657.530 kb on - strand, within PS417_02870 at 657.543 kb on + strand, within PS417_02870 at 657.544 kb on - strand, within PS417_02870 at 657.544 kb on - strand, within PS417_02870 at 657.582 kb on + strand, within PS417_02870 at 657.777 kb on + strand, within PS417_02870 at 657.778 kb on - strand, within PS417_02870 at 657.778 kb on - strand, within PS417_02870 at 657.795 kb on + strand, within PS417_02870 at 658.133 kb on - strand at 658.133 kb on - strand at 658.135 kb on - strand at 658.191 kb on + strand at 658.246 kb on + strand at 658.247 kb on - strand at 658.517 kb on - strand, within PS417_02875 at 658.664 kb on + strand at 658.877 kb on - strand, within PS417_02880 at 659.076 kb on - strand, within PS417_02880
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 655,329 - PS417_02865 0.53 +0.8 655,619 + PS417_02865 0.74 +0.0 655,739 + -1.5 655,740 - PS417_02865 0.82 -1.3 655,842 - PS417_02865 0.90 +0.2 655,874 + +0.0 655,875 - +0.5 656,415 + PS417_02870 0.15 +1.5 656,653 - PS417_02870 0.27 +2.5 656,826 + PS417_02870 0.35 +0.6 657,018 + PS417_02870 0.44 -0.9 657,045 + PS417_02870 0.46 +0.5 657,045 + PS417_02870 0.46 +0.5 657,046 - PS417_02870 0.46 -0.5 657,087 + PS417_02870 0.48 +1.5 657,088 - PS417_02870 0.48 +1.5 657,088 - PS417_02870 0.48 +1.5 657,294 + PS417_02870 0.58 +1.5 657,301 - PS417_02870 0.58 -1.1 657,304 - PS417_02870 0.58 -0.8 657,304 - PS417_02870 0.58 +1.5 657,530 - PS417_02870 0.69 +2.5 657,543 + PS417_02870 0.70 -1.0 657,544 - PS417_02870 0.70 +0.7 657,544 - PS417_02870 0.70 +1.5 657,582 + PS417_02870 0.72 +0.5 657,777 + PS417_02870 0.81 +2.5 657,778 - PS417_02870 0.81 +1.5 657,778 - PS417_02870 0.81 +0.5 657,795 + PS417_02870 0.82 +1.5 658,133 - +1.5 658,133 - +1.1 658,135 - +1.5 658,191 + +2.1 658,246 + +1.5 658,247 - +0.5 658,517 - PS417_02875 0.65 +1.3 658,664 + +1.5 658,877 - PS417_02880 0.44 +1.5 659,076 - PS417_02880 0.86 -0.5
Or see this region's nucleotide sequence