Strain Fitness in Pseudomonas simiae WCS417 around PS417_28180

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28170 and PS417_28175 overlap by 4 nucleotidesPS417_28175 and PS417_28180 are separated by 10 nucleotidesPS417_28180 and PS417_28185 are separated by 135 nucleotides PS417_28170: PS417_28170 - transcriptional regulator, at 6,083,762 to 6,084,400 _28170 PS417_28175: PS417_28175 - GNAT family acetyltransferase, at 6,084,397 to 6,084,843 _28175 PS417_28180: PS417_28180 - GNAT family acetyltransferase, at 6,084,854 to 6,085,525 _28180 PS417_28185: PS417_28185 - homocysteine methyltransferase, at 6,085,661 to 6,086,557 _28185 Position (kb) 6084 6085 6086Strain fitness (log2 ratio) -1 0 1 2 3at 6084.011 kb on + strand, within PS417_28170at 6084.011 kb on + strand, within PS417_28170at 6084.012 kb on - strand, within PS417_28170at 6084.074 kb on + strand, within PS417_28170at 6084.075 kb on - strand, within PS417_28170at 6084.108 kb on + strand, within PS417_28170at 6084.213 kb on - strand, within PS417_28170at 6084.466 kb on + strand, within PS417_28175at 6084.466 kb on + strand, within PS417_28175at 6084.467 kb on - strand, within PS417_28175at 6084.479 kb on - strand, within PS417_28175at 6084.547 kb on - strand, within PS417_28175at 6084.550 kb on + strand, within PS417_28175at 6084.600 kb on + strand, within PS417_28175at 6084.600 kb on + strand, within PS417_28175at 6085.013 kb on + strand, within PS417_28180at 6085.013 kb on + strand, within PS417_28180at 6085.014 kb on - strand, within PS417_28180at 6085.091 kb on + strand, within PS417_28180at 6085.129 kb on - strand, within PS417_28180at 6085.242 kb on - strand, within PS417_28180at 6085.242 kb on - strand, within PS417_28180at 6085.242 kb on - strand, within PS417_28180at 6085.256 kb on + strand, within PS417_28180at 6085.256 kb on + strand, within PS417_28180at 6085.257 kb on - strand, within PS417_28180at 6085.257 kb on - strand, within PS417_28180at 6085.322 kb on + strand, within PS417_28180at 6085.322 kb on + strand, within PS417_28180at 6085.523 kb on + strandat 6085.768 kb on - strand, within PS417_28185at 6086.227 kb on - strand, within PS417_28185at 6086.379 kb on + strand, within PS417_28185at 6086.418 kb on + strand, within PS417_28185at 6086.418 kb on + strand, within PS417_28185at 6086.418 kb on + strand, within PS417_28185at 6086.419 kb on - strand, within PS417_28185

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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6,084,011 + PS417_28170 0.39 +0.5
6,084,011 + PS417_28170 0.39 -0.4
6,084,012 - PS417_28170 0.39 -0.0
6,084,074 + PS417_28170 0.49 -0.5
6,084,075 - PS417_28170 0.49 +0.4
6,084,108 + PS417_28170 0.54 -0.7
6,084,213 - PS417_28170 0.71 +0.1
6,084,466 + PS417_28175 0.15 +0.4
6,084,466 + PS417_28175 0.15 +0.4
6,084,467 - PS417_28175 0.16 -0.9
6,084,479 - PS417_28175 0.18 -0.4
6,084,547 - PS417_28175 0.34 +0.2
6,084,550 + PS417_28175 0.34 -0.0
6,084,600 + PS417_28175 0.45 +0.1
6,084,600 + PS417_28175 0.45 -0.3
6,085,013 + PS417_28180 0.24 +0.5
6,085,013 + PS417_28180 0.24 -0.2
6,085,014 - PS417_28180 0.24 +0.8
6,085,091 + PS417_28180 0.35 +0.0
6,085,129 - PS417_28180 0.41 +0.2
6,085,242 - PS417_28180 0.58 +1.5
6,085,242 - PS417_28180 0.58 -0.5
6,085,242 - PS417_28180 0.58 -0.1
6,085,256 + PS417_28180 0.60 +1.1
6,085,256 + PS417_28180 0.60 -0.7
6,085,257 - PS417_28180 0.60 -1.0
6,085,257 - PS417_28180 0.60 +3.7
6,085,322 + PS417_28180 0.70 +1.5
6,085,322 + PS417_28180 0.70 -1.0
6,085,523 + -0.3
6,085,768 - PS417_28185 0.12 -0.5
6,086,227 - PS417_28185 0.63 -0.0
6,086,379 + PS417_28185 0.80 -0.5
6,086,418 + PS417_28185 0.84 -0.8
6,086,418 + PS417_28185 0.84 -0.8
6,086,418 + PS417_28185 0.84 +2.5
6,086,419 - PS417_28185 0.85 +0.1

Or see this region's nucleotide sequence