Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02635 and PS417_02640 are separated by 207 nucleotides PS417_02640 and PS417_02645 are separated by 154 nucleotides
PS417_02635: PS417_02635 - nicotinate phosphoribosyltransferase, at 602,109 to 603,323
_02635
PS417_02640: PS417_02640 - LysR family transcriptional regulator, at 603,531 to 604,421
_02640
PS417_02645: PS417_02645 - aldehyde dehydrogenase, at 604,576 to 606,066
_02645
Position (kb) 603
604
605 Strain fitness (log2 ratio) -2
-1
0
1
2 at 602.746 kb on - strand, within PS417_02635 at 602.746 kb on - strand, within PS417_02635 at 602.866 kb on + strand, within PS417_02635 at 602.997 kb on + strand, within PS417_02635 at 602.998 kb on - strand, within PS417_02635 at 602.998 kb on - strand, within PS417_02635 at 603.028 kb on + strand, within PS417_02635 at 603.170 kb on - strand, within PS417_02635 at 603.170 kb on - strand, within PS417_02635 at 603.266 kb on - strand at 603.365 kb on + strand at 603.375 kb on + strand at 603.375 kb on + strand at 603.376 kb on - strand at 603.398 kb on + strand at 603.399 kb on - strand at 603.610 kb on + strand at 603.610 kb on + strand at 603.611 kb on - strand at 603.613 kb on + strand at 603.741 kb on - strand, within PS417_02640 at 603.741 kb on - strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.743 kb on - strand, within PS417_02640 at 603.770 kb on - strand, within PS417_02640 at 603.788 kb on - strand, within PS417_02640 at 603.976 kb on + strand, within PS417_02640 at 603.976 kb on + strand, within PS417_02640 at 603.977 kb on - strand, within PS417_02640 at 604.109 kb on - strand, within PS417_02640 at 604.159 kb on + strand, within PS417_02640 at 604.166 kb on + strand, within PS417_02640 at 604.512 kb on - strand at 604.810 kb on + strand, within PS417_02645 at 604.811 kb on - strand, within PS417_02645 at 604.934 kb on - strand, within PS417_02645 at 604.971 kb on + strand, within PS417_02645 at 604.971 kb on + strand, within PS417_02645 at 604.971 kb on + strand, within PS417_02645 at 604.972 kb on - strand, within PS417_02645 at 604.972 kb on - strand, within PS417_02645 at 605.180 kb on - strand, within PS417_02645 at 605.180 kb on - strand, within PS417_02645
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 602,746 - PS417_02635 0.52 -0.1 602,746 - PS417_02635 0.52 +0.3 602,866 + PS417_02635 0.62 +0.3 602,997 + PS417_02635 0.73 +1.2 602,998 - PS417_02635 0.73 -0.4 602,998 - PS417_02635 0.73 +0.0 603,028 + PS417_02635 0.76 -1.3 603,170 - PS417_02635 0.87 -2.4 603,170 - PS417_02635 0.87 -0.1 603,266 - -2.6 603,365 + -1.4 603,375 + +1.5 603,375 + -0.9 603,376 - -0.4 603,398 + +0.4 603,399 - +2.5 603,610 + +0.6 603,610 + +0.9 603,611 - -0.8 603,613 + +0.5 603,741 - PS417_02640 0.24 +2.1 603,741 - PS417_02640 0.24 -1.4 603,742 + PS417_02640 0.24 +1.1 603,742 + PS417_02640 0.24 +0.1 603,742 + PS417_02640 0.24 +0.5 603,742 + PS417_02640 0.24 +1.1 603,743 - PS417_02640 0.24 +0.5 603,770 - PS417_02640 0.27 -0.2 603,788 - PS417_02640 0.29 +0.5 603,976 + PS417_02640 0.50 +1.9 603,976 + PS417_02640 0.50 -0.1 603,977 - PS417_02640 0.50 +0.6 604,109 - PS417_02640 0.65 +1.5 604,159 + PS417_02640 0.70 -2.3 604,166 + PS417_02640 0.71 +0.3 604,512 - +0.4 604,810 + PS417_02645 0.16 -0.1 604,811 - PS417_02645 0.16 -0.5 604,934 - PS417_02645 0.24 -0.2 604,971 + PS417_02645 0.26 +0.4 604,971 + PS417_02645 0.26 -0.2 604,971 + PS417_02645 0.26 -1.3 604,972 - PS417_02645 0.27 -1.3 604,972 - PS417_02645 0.27 -0.4 605,180 - PS417_02645 0.41 +1.2 605,180 - PS417_02645 0.41 +1.8
Or see this region's nucleotide sequence