Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25645 and PS417_25650 are separated by 3 nucleotides PS417_25650 and PS417_25655 are separated by 77 nucleotides PS417_25655 and PS417_25660 are separated by 165 nucleotides
PS417_25645: PS417_25645 - peptidase M23, at 5,539,791 to 5,541,209
_25645
PS417_25650: PS417_25650 - anhydro-N-acetylmuramic acid kinase, at 5,541,213 to 5,542,304
_25650
PS417_25655: PS417_25655 - iron--sulfur cluster insertion protein ErpA, at 5,542,382 to 5,542,732
_25655
PS417_25660: PS417_25660 - N-acetyl-gamma-glutamyl-phosphate reductase, at 5,542,898 to 5,543,932
_25660
Position (kb) 5541
5542
5543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5540.415 kb on - strand, within PS417_25645 at 5540.641 kb on - strand, within PS417_25645 at 5540.667 kb on + strand, within PS417_25645 at 5540.670 kb on + strand, within PS417_25645 at 5540.687 kb on + strand, within PS417_25645 at 5540.687 kb on + strand, within PS417_25645 at 5540.732 kb on + strand, within PS417_25645 at 5540.732 kb on + strand, within PS417_25645 at 5540.733 kb on - strand, within PS417_25645 at 5540.916 kb on + strand, within PS417_25645 at 5541.042 kb on + strand, within PS417_25645 at 5541.222 kb on + strand at 5541.222 kb on + strand at 5541.312 kb on + strand at 5541.313 kb on - strand at 5541.313 kb on - strand at 5541.329 kb on + strand, within PS417_25650 at 5541.330 kb on - strand, within PS417_25650 at 5541.334 kb on + strand, within PS417_25650 at 5541.576 kb on - strand, within PS417_25650 at 5541.576 kb on - strand, within PS417_25650 at 5541.803 kb on - strand, within PS417_25650 at 5542.369 kb on + strand at 5542.769 kb on - strand at 5542.769 kb on - strand at 5542.823 kb on + strand at 5542.824 kb on - strand at 5542.824 kb on - strand at 5542.836 kb on - strand at 5542.900 kb on - strand at 5542.900 kb on - strand at 5542.900 kb on - strand at 5543.238 kb on - strand, within PS417_25660
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,540,415 - PS417_25645 0.44 -1.0 5,540,641 - PS417_25645 0.60 +1.5 5,540,667 + PS417_25645 0.62 -0.9 5,540,670 + PS417_25645 0.62 -1.3 5,540,687 + PS417_25645 0.63 -0.0 5,540,687 + PS417_25645 0.63 -0.8 5,540,732 + PS417_25645 0.66 +0.4 5,540,732 + PS417_25645 0.66 -1.7 5,540,733 - PS417_25645 0.66 +1.5 5,540,916 + PS417_25645 0.79 +1.0 5,541,042 + PS417_25645 0.88 -1.3 5,541,222 + +0.7 5,541,222 + +2.0 5,541,312 + -1.0 5,541,313 - -0.4 5,541,313 - +1.6 5,541,329 + PS417_25650 0.11 -1.0 5,541,330 - PS417_25650 0.11 -1.0 5,541,334 + PS417_25650 0.11 -0.4 5,541,576 - PS417_25650 0.33 -0.4 5,541,576 - PS417_25650 0.33 +1.6 5,541,803 - PS417_25650 0.54 -2.1 5,542,369 + -0.1 5,542,769 - +1.0 5,542,769 - +0.4 5,542,823 + +2.0 5,542,824 - +0.2 5,542,824 - +0.1 5,542,836 - -1.1 5,542,900 - -2.7 5,542,900 - -0.0 5,542,900 - -0.4 5,543,238 - PS417_25660 0.33 -0.3
Or see this region's nucleotide sequence