Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23365 and PS417_23370 are separated by 145 nucleotides PS417_23370 and PS417_23375 are separated by 11 nucleotides PS417_23375 and PS417_23380 overlap by 1 nucleotides PS417_23380 and PS417_23385 are separated by 3 nucleotides
PS417_23365: PS417_23365 - aminotransferase, at 5,057,906 to 5,059,000
_23365
PS417_23370: PS417_23370 - protoheme IX farnesyltransferase, at 5,059,146 to 5,060,033
_23370
PS417_23375: PS417_23375 - cytochrome C oxidase, at 5,060,045 to 5,060,386
_23375
PS417_23380: PS417_23380 - cytochrome o ubiquinol oxidase subunit III, at 5,060,386 to 5,061,012
_23380
PS417_23385: PS417_23385 - cytochrome o ubiquinol oxidase subunit I, at 5,061,016 to 5,063,034
_23385
Position (kb) 5059
5060
5061 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5058.161 kb on - strand, within PS417_23365 at 5058.411 kb on + strand, within PS417_23365 at 5058.411 kb on + strand, within PS417_23365 at 5058.412 kb on - strand at 5058.497 kb on - strand, within PS417_23365 at 5058.786 kb on + strand, within PS417_23365 at 5058.786 kb on + strand, within PS417_23365 at 5058.786 kb on + strand, within PS417_23365 at 5058.787 kb on - strand, within PS417_23365 at 5058.787 kb on - strand, within PS417_23365 at 5058.787 kb on - strand, within PS417_23365 at 5058.787 kb on - strand, within PS417_23365 at 5058.790 kb on + strand, within PS417_23365 at 5058.790 kb on + strand, within PS417_23365 at 5058.790 kb on + strand, within PS417_23365 at 5058.791 kb on - strand, within PS417_23365 at 5058.791 kb on - strand at 5058.791 kb on - strand, within PS417_23365 at 5058.804 kb on + strand, within PS417_23365 at 5058.879 kb on + strand, within PS417_23365 at 5059.001 kb on - strand at 5059.156 kb on + strand at 5059.156 kb on + strand at 5059.157 kb on - strand at 5059.157 kb on - strand at 5059.157 kb on - strand at 5059.157 kb on - strand at 5059.297 kb on + strand at 5059.297 kb on + strand, within PS417_23370 at 5059.306 kb on + strand at 5059.336 kb on + strand, within PS417_23370 at 5059.336 kb on + strand, within PS417_23370 at 5059.337 kb on - strand, within PS417_23370 at 5059.565 kb on + strand, within PS417_23370 at 5059.583 kb on - strand, within PS417_23370 at 5059.675 kb on + strand, within PS417_23370 at 5059.676 kb on - strand, within PS417_23370 at 5059.676 kb on - strand, within PS417_23370 at 5059.884 kb on + strand, within PS417_23370 at 5060.065 kb on + strand at 5060.184 kb on + strand, within PS417_23375 at 5060.263 kb on - strand, within PS417_23375 at 5060.516 kb on + strand, within PS417_23380 at 5060.516 kb on + strand, within PS417_23380 at 5060.517 kb on - strand, within PS417_23380 at 5060.730 kb on - strand, within PS417_23380 at 5060.861 kb on + strand, within PS417_23380 at 5060.906 kb on + strand, within PS417_23380 at 5061.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,058,161 - PS417_23365 0.23 -0.9 5,058,411 + PS417_23365 0.46 -1.3 5,058,411 + PS417_23365 0.46 -0.1 5,058,412 - +3.1 5,058,497 - PS417_23365 0.54 -0.1 5,058,786 + PS417_23365 0.80 -0.0 5,058,786 + PS417_23365 0.80 -0.3 5,058,786 + PS417_23365 0.80 -0.2 5,058,787 - PS417_23365 0.80 -0.1 5,058,787 - PS417_23365 0.80 +0.3 5,058,787 - PS417_23365 0.80 -0.8 5,058,787 - PS417_23365 0.80 +0.5 5,058,790 + PS417_23365 0.81 -1.4 5,058,790 + PS417_23365 0.81 +1.5 5,058,790 + PS417_23365 0.81 +0.5 5,058,791 - PS417_23365 0.81 -1.3 5,058,791 - -0.8 5,058,791 - PS417_23365 0.81 +0.3 5,058,804 + PS417_23365 0.82 +0.9 5,058,879 + PS417_23365 0.89 -0.2 5,059,001 - +0.8 5,059,156 + -0.2 5,059,156 + +0.0 5,059,157 - -0.8 5,059,157 - +1.9 5,059,157 - +1.3 5,059,157 - -0.4 5,059,297 + -0.1 5,059,297 + PS417_23370 0.17 -0.9 5,059,306 + +0.5 5,059,336 + PS417_23370 0.21 -1.7 5,059,336 + PS417_23370 0.21 -0.1 5,059,337 - PS417_23370 0.22 -0.7 5,059,565 + PS417_23370 0.47 -3.0 5,059,583 - PS417_23370 0.49 +0.6 5,059,675 + PS417_23370 0.60 -2.0 5,059,676 - PS417_23370 0.60 -0.3 5,059,676 - PS417_23370 0.60 -0.8 5,059,884 + PS417_23370 0.83 -0.3 5,060,065 + +0.5 5,060,184 + PS417_23375 0.41 -3.5 5,060,263 - PS417_23375 0.64 -1.7 5,060,516 + PS417_23380 0.21 -0.5 5,060,516 + PS417_23380 0.21 -2.1 5,060,517 - PS417_23380 0.21 -2.6 5,060,730 - PS417_23380 0.55 +3.1 5,060,861 + PS417_23380 0.76 -0.1 5,060,906 + PS417_23380 0.83 -0.6 5,061,002 - +0.3
Or see this region's nucleotide sequence