Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23085 and PS417_23090 are separated by 99 nucleotides PS417_23090 and PS417_23095 are separated by 10 nucleotides
PS417_23085: PS417_23085 - permease, at 5,004,469 to 5,005,236
_23085
PS417_23090: PS417_23090 - LysR family transcriptional regulator, at 5,005,336 to 5,006,226
_23090
PS417_23095: PS417_23095 - exodeoxyribonuclease, at 5,006,237 to 5,007,616
_23095
Position (kb) 5005
5006
5007 Strain fitness (log2 ratio) -1
0
1 at 5004.449 kb on + strand at 5004.482 kb on + strand at 5004.644 kb on + strand, within PS417_23085 at 5004.749 kb on + strand, within PS417_23085 at 5004.889 kb on - strand, within PS417_23085 at 5004.889 kb on - strand, within PS417_23085 at 5004.913 kb on + strand, within PS417_23085 at 5004.913 kb on + strand, within PS417_23085 at 5005.154 kb on + strand, within PS417_23085 at 5005.154 kb on + strand, within PS417_23085 at 5005.155 kb on - strand, within PS417_23085 at 5005.155 kb on - strand, within PS417_23085 at 5005.241 kb on - strand at 5005.249 kb on - strand at 5005.252 kb on - strand at 5005.269 kb on + strand at 5005.270 kb on - strand at 5005.292 kb on + strand at 5005.292 kb on + strand at 5005.292 kb on + strand at 5005.361 kb on - strand at 5005.592 kb on + strand, within PS417_23090 at 5005.597 kb on - strand, within PS417_23090 at 5005.709 kb on - strand, within PS417_23090 at 5005.826 kb on + strand, within PS417_23090 at 5005.826 kb on + strand, within PS417_23090 at 5005.826 kb on + strand, within PS417_23090 at 5005.827 kb on - strand at 5005.828 kb on + strand, within PS417_23090 at 5005.828 kb on + strand, within PS417_23090 at 5005.829 kb on - strand, within PS417_23090 at 5005.830 kb on + strand, within PS417_23090 at 5005.960 kb on + strand, within PS417_23090 at 5005.961 kb on - strand, within PS417_23090 at 5006.223 kb on - strand at 5006.224 kb on + strand at 5006.242 kb on + strand at 5006.242 kb on + strand at 5006.243 kb on - strand at 5006.341 kb on + strand at 5006.342 kb on - strand at 5006.730 kb on + strand, within PS417_23095
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,004,449 + -0.0 5,004,482 + -0.6 5,004,644 + PS417_23085 0.23 -0.2 5,004,749 + PS417_23085 0.36 -0.8 5,004,889 - PS417_23085 0.55 +0.5 5,004,889 - PS417_23085 0.55 +0.2 5,004,913 + PS417_23085 0.58 -0.6 5,004,913 + PS417_23085 0.58 -0.2 5,005,154 + PS417_23085 0.89 +0.6 5,005,154 + PS417_23085 0.89 -0.1 5,005,155 - PS417_23085 0.89 +0.2 5,005,155 - PS417_23085 0.89 +0.7 5,005,241 - +0.0 5,005,249 - -0.1 5,005,252 - -1.3 5,005,269 + +0.5 5,005,270 - -1.6 5,005,292 + -0.5 5,005,292 + +0.2 5,005,292 + -0.1 5,005,361 - -0.6 5,005,592 + PS417_23090 0.29 +0.3 5,005,597 - PS417_23090 0.29 -0.5 5,005,709 - PS417_23090 0.42 +0.3 5,005,826 + PS417_23090 0.55 -0.3 5,005,826 + PS417_23090 0.55 +0.6 5,005,826 + PS417_23090 0.55 -1.4 5,005,827 - -0.8 5,005,828 + PS417_23090 0.55 +1.0 5,005,828 + PS417_23090 0.55 +0.5 5,005,829 - PS417_23090 0.55 +1.2 5,005,830 + PS417_23090 0.55 -0.3 5,005,960 + PS417_23090 0.70 +0.7 5,005,961 - PS417_23090 0.70 +0.1 5,006,223 - -0.1 5,006,224 + +0.5 5,006,242 + -1.2 5,006,242 + -0.7 5,006,243 - +1.5 5,006,341 + +1.5 5,006,342 - -0.6 5,006,730 + PS417_23095 0.36 +0.4
Or see this region's nucleotide sequence