Strain Fitness in Pseudomonas simiae WCS417 around PS417_21365

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21350 and PS417_21355 are separated by 51 nucleotidesPS417_21355 and PS417_21360 are separated by 51 nucleotidesPS417_21360 and PS417_21365 are separated by 51 nucleotidesPS417_21365 and PS417_21370 overlap by 8 nucleotides PS417_21350: PS417_21350 - hypothetical protein, at 4,640,188 to 4,640,520 _21350 PS417_21355: PS417_21355 - hypothetical protein, at 4,640,572 to 4,640,838 _21355 PS417_21360: PS417_21360 - termination factor Rho, at 4,640,890 to 4,641,270 _21360 PS417_21365: PS417_21365 - sugar kinase, at 4,641,322 to 4,642,239 _21365 PS417_21370: PS417_21370 - allantoin permease, at 4,642,232 to 4,643,698 _21370 Position (kb) 4641 4642 4643Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 4640.567 kb on + strandat 4640.662 kb on + strand, within PS417_21355at 4640.758 kb on + strand, within PS417_21355at 4640.836 kb on + strandat 4640.915 kb on - strandat 4641.209 kb on + strand, within PS417_21360at 4641.459 kb on + strand, within PS417_21365at 4641.459 kb on + strand, within PS417_21365at 4641.460 kb on - strand, within PS417_21365at 4641.464 kb on - strand, within PS417_21365at 4641.700 kb on + strand, within PS417_21365at 4641.704 kb on - strand, within PS417_21365at 4641.831 kb on + strand, within PS417_21365at 4641.831 kb on + strand, within PS417_21365at 4641.831 kb on + strand, within PS417_21365at 4641.845 kb on + strand, within PS417_21365at 4641.845 kb on + strand, within PS417_21365at 4641.845 kb on + strand, within PS417_21365at 4641.845 kb on + strand, within PS417_21365at 4641.846 kb on - strand, within PS417_21365at 4641.846 kb on - strand, within PS417_21365at 4641.846 kb on - strand, within PS417_21365at 4641.846 kb on - strand, within PS417_21365at 4641.846 kb on - strand, within PS417_21365at 4641.846 kb on - strandat 4641.846 kb on - strand, within PS417_21365at 4641.847 kb on + strand, within PS417_21365at 4641.847 kb on + strand, within PS417_21365at 4641.847 kb on + strand, within PS417_21365at 4641.847 kb on + strand, within PS417_21365at 4641.847 kb on + strand, within PS417_21365at 4641.847 kb on + strand, within PS417_21365at 4641.847 kb on + strand, within PS417_21365at 4641.848 kb on - strand, within PS417_21365at 4641.848 kb on - strand, within PS417_21365at 4641.848 kb on - strand, within PS417_21365at 4641.848 kb on - strand, within PS417_21365at 4641.848 kb on - strand, within PS417_21365at 4641.851 kb on + strand, within PS417_21365at 4641.851 kb on + strand, within PS417_21365at 4641.851 kb on + strand, within PS417_21365at 4641.851 kb on + strand, within PS417_21365at 4641.852 kb on - strand, within PS417_21365at 4641.852 kb on - strand, within PS417_21365at 4642.074 kb on - strand, within PS417_21365at 4642.183 kb on - strandat 4642.233 kb on + strandat 4642.234 kb on - strandat 4642.250 kb on + strandat 4642.293 kb on + strandat 4642.294 kb on - strandat 4642.527 kb on + strand, within PS417_21370at 4642.527 kb on + strand, within PS417_21370at 4642.527 kb on + strand, within PS417_21370at 4642.528 kb on - strand, within PS417_21370at 4642.644 kb on + strand, within PS417_21370at 4642.644 kb on + strand, within PS417_21370at 4642.645 kb on - strand, within PS417_21370at 4642.645 kb on - strand, within PS417_21370at 4642.740 kb on + strand, within PS417_21370at 4643.148 kb on + strand, within PS417_21370at 4643.148 kb on + strand, within PS417_21370at 4643.148 kb on + strand, within PS417_21370at 4643.148 kb on + strand, within PS417_21370at 4643.148 kb on + strand, within PS417_21370at 4643.149 kb on - strand, within PS417_21370

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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4,640,567 + +3.5
4,640,662 + PS417_21355 0.34 +1.1
4,640,758 + PS417_21355 0.70 -0.2
4,640,836 + -1.1
4,640,915 - -1.6
4,641,209 + PS417_21360 0.84 +0.2
4,641,459 + PS417_21365 0.15 +0.0
4,641,459 + PS417_21365 0.15 -1.3
4,641,460 - PS417_21365 0.15 +0.5
4,641,464 - PS417_21365 0.15 +0.6
4,641,700 + PS417_21365 0.41 +0.5
4,641,704 - PS417_21365 0.42 -0.6
4,641,831 + PS417_21365 0.55 -0.5
4,641,831 + PS417_21365 0.55 +0.3
4,641,831 + PS417_21365 0.55 -0.3
4,641,845 + PS417_21365 0.57 +0.1
4,641,845 + PS417_21365 0.57 -0.1
4,641,845 + PS417_21365 0.57 -0.3
4,641,845 + PS417_21365 0.57 +7.4
4,641,846 - PS417_21365 0.57 +0.2
4,641,846 - PS417_21365 0.57 -2.1
4,641,846 - PS417_21365 0.57 -0.7
4,641,846 - PS417_21365 0.57 -0.1
4,641,846 - PS417_21365 0.57 -1.6
4,641,846 - -0.8
4,641,846 - PS417_21365 0.57 +0.7
4,641,847 + PS417_21365 0.57 -0.6
4,641,847 + PS417_21365 0.57 +0.1
4,641,847 + PS417_21365 0.57 -0.8
4,641,847 + PS417_21365 0.57 +0.8
4,641,847 + PS417_21365 0.57 -0.6
4,641,847 + PS417_21365 0.57 -0.1
4,641,847 + PS417_21365 0.57 -1.6
4,641,848 - PS417_21365 0.57 -0.8
4,641,848 - PS417_21365 0.57 -0.7
4,641,848 - PS417_21365 0.57 +0.9
4,641,848 - PS417_21365 0.57 +0.9
4,641,848 - PS417_21365 0.57 +1.1
4,641,851 + PS417_21365 0.58 +0.1
4,641,851 + PS417_21365 0.58 +1.0
4,641,851 + PS417_21365 0.58 +1.1
4,641,851 + PS417_21365 0.58 -0.1
4,641,852 - PS417_21365 0.58 -0.4
4,641,852 - PS417_21365 0.58 +0.6
4,642,074 - PS417_21365 0.82 -0.0
4,642,183 - -1.6
4,642,233 + +0.5
4,642,234 - -0.3
4,642,250 + +0.0
4,642,293 + +0.8
4,642,294 - -0.4
4,642,527 + PS417_21370 0.20 -0.4
4,642,527 + PS417_21370 0.20 -0.9
4,642,527 + PS417_21370 0.20 +2.5
4,642,528 - PS417_21370 0.20 +0.1
4,642,644 + PS417_21370 0.28 +3.1
4,642,644 + PS417_21370 0.28 -0.3
4,642,645 - PS417_21370 0.28 +1.8
4,642,645 - PS417_21370 0.28 -0.5
4,642,740 + PS417_21370 0.35 +0.2
4,643,148 + PS417_21370 0.62 -0.5
4,643,148 + PS417_21370 0.62 -0.0
4,643,148 + PS417_21370 0.62 +1.1
4,643,148 + PS417_21370 0.62 -0.2
4,643,148 + PS417_21370 0.62 -0.3
4,643,149 - PS417_21370 0.63 -0.6

Or see this region's nucleotide sequence