Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01620 and PS417_01625 are separated by 119 nucleotides PS417_01625 and PS417_01630 overlap by 2 nucleotides PS417_01630 and PS417_01635 are separated by 532 nucleotides
PS417_01620: PS417_01620 - preprotein translocase subunit SecB, at 356,143 to 356,622
_01620
PS417_01625: PS417_01625 - rRNA methylase, at 356,742 to 357,197
_01625
PS417_01630: PS417_01630 - hypothetical protein, at 357,196 to 357,636
_01630
PS417_01635: PS417_01635 - nitrogen regulation protein NR(I), at 358,169 to 359,605
_01635
Position (kb) 357
358 Strain fitness (log2 ratio) -1
0
1
2 at 356.209 kb on + strand, within PS417_01620 at 356.209 kb on + strand, within PS417_01620 at 356.407 kb on - strand, within PS417_01620 at 356.620 kb on + strand at 356.620 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.681 kb on + strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.682 kb on - strand at 356.735 kb on + strand at 356.743 kb on + strand at 356.868 kb on + strand, within PS417_01625 at 357.261 kb on + strand, within PS417_01630 at 357.262 kb on - strand, within PS417_01630 at 357.818 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 357.843 kb on - strand at 358.085 kb on + strand at 358.085 kb on + strand at 358.112 kb on + strand at 358.113 kb on - strand at 358.114 kb on + strand at 358.114 kb on + strand at 358.115 kb on - strand at 358.115 kb on - strand at 358.115 kb on - strand at 358.244 kb on - strand at 358.563 kb on + strand, within PS417_01635 at 358.563 kb on + strand, within PS417_01635
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 356,209 + PS417_01620 0.14 -1.4 356,209 + PS417_01620 0.14 -1.3 356,407 - PS417_01620 0.55 +0.6 356,620 + +0.2 356,620 + -0.5 356,681 + +0.1 356,681 + -0.2 356,681 + +0.1 356,681 + -0.1 356,681 + +0.2 356,681 + +0.4 356,681 + +0.2 356,682 - +0.5 356,682 - +0.4 356,682 - -0.2 356,682 - -0.6 356,682 - -0.9 356,682 - -0.0 356,682 - +0.0 356,682 - -0.1 356,682 - +0.0 356,735 + +1.6 356,743 + +0.2 356,868 + PS417_01625 0.28 +0.2 357,261 + PS417_01630 0.15 +2.0 357,262 - PS417_01630 0.15 +1.8 357,818 - -0.5 357,843 - +0.4 357,843 - +0.0 357,843 - +0.0 357,843 - -0.2 357,843 - -0.3 357,843 - +2.2 358,085 + -0.9 358,085 + -1.0 358,112 + -0.8 358,113 - -0.8 358,114 + +1.6 358,114 + +0.2 358,115 - -0.4 358,115 - -1.2 358,115 - +2.6 358,244 - -1.4 358,563 + PS417_01635 0.27 -0.0 358,563 + PS417_01635 0.27 +2.4
Or see this region's nucleotide sequence