Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15505 and PS417_15510 are separated by 55 nucleotides PS417_15510 and PS417_15515 are separated by 90 nucleotides PS417_15515 and PS417_15520 are separated by 23 nucleotides PS417_15520 and PS417_15525 are separated by 120 nucleotides
PS417_15505: PS417_15505 - glutaminase, at 3,396,465 to 3,397,373
_15505
PS417_15510: PS417_15510 - hypothetical protein, at 3,397,429 to 3,397,773
_15510
PS417_15515: PS417_15515 - hypothetical protein, at 3,397,864 to 3,398,211
_15515
PS417_15520: PS417_15520 - hypothetical protein, at 3,398,235 to 3,398,645
_15520
PS417_15525: PS417_15525 - AraC family transcriptional regulator, at 3,398,766 to 3,399,632
_15525
Position (kb) 3397
3398 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3396.569 kb on + strand, within PS417_15505 at 3396.569 kb on + strand, within PS417_15505 at 3396.662 kb on - strand, within PS417_15505 at 3396.818 kb on - strand, within PS417_15505 at 3396.818 kb on - strand, within PS417_15505 at 3397.303 kb on + strand at 3397.303 kb on + strand at 3397.425 kb on + strand at 3397.425 kb on + strand at 3397.426 kb on - strand at 3397.502 kb on - strand, within PS417_15510 at 3397.656 kb on + strand, within PS417_15510 at 3397.751 kb on + strand at 3397.752 kb on - strand at 3397.752 kb on - strand at 3397.810 kb on + strand at 3398.227 kb on - strand at 3398.416 kb on + strand, within PS417_15520 at 3398.416 kb on + strand, within PS417_15520 at 3398.690 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 3,396,569 + PS417_15505 0.11 -2.0 3,396,569 + PS417_15505 0.11 +0.3 3,396,662 - PS417_15505 0.22 -0.4 3,396,818 - PS417_15505 0.39 +1.5 3,396,818 - PS417_15505 0.39 +2.6 3,397,303 + -0.6 3,397,303 + +0.3 3,397,425 + -0.1 3,397,425 + -0.5 3,397,426 - -0.3 3,397,502 - PS417_15510 0.21 -0.5 3,397,656 + PS417_15510 0.66 -1.2 3,397,751 + -0.3 3,397,752 - +0.9 3,397,752 - -2.8 3,397,810 + +0.4 3,398,227 - -0.4 3,398,416 + PS417_15520 0.44 -0.2 3,398,416 + PS417_15520 0.44 -0.5 3,398,690 + -0.0
Or see this region's nucleotide sequence