Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00750 and PS417_00755 are separated by 2 nucleotides PS417_00755 and PS417_00760 are separated by 367 nucleotides
PS417_00750: PS417_00750 - N-glycosyltransferase, at 159,282 to 160,622
_00750
PS417_00755: PS417_00755 - biofilm PGA synthesis protein PgaD, at 160,625 to 161,107
_00755
PS417_00760: PS417_00760 - ShlB family hemolysin secretion/activation protein, at 161,475 to 163,196
_00760
Position (kb) 160
161
162 Strain fitness (log2 ratio) -1
0
1
2 at 159.753 kb on + strand, within PS417_00750 at 159.754 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.996 kb on - strand, within PS417_00750 at 160.095 kb on + strand, within PS417_00750 at 160.096 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.309 kb on - strand, within PS417_00750 at 160.651 kb on + strand at 160.651 kb on + strand at 160.651 kb on + strand at 160.652 kb on - strand at 160.652 kb on - strand at 160.652 kb on - strand at 160.805 kb on + strand, within PS417_00755 at 161.106 kb on - strand at 161.157 kb on + strand at 161.221 kb on + strand at 161.222 kb on - strand at 161.261 kb on - strand at 161.344 kb on - strand at 161.344 kb on - strand at 161.434 kb on + strand at 161.779 kb on - strand, within PS417_00760 at 161.779 kb on - strand, within PS417_00760 at 161.874 kb on + strand, within PS417_00760 at 161.874 kb on + strand, within PS417_00760
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 159,753 + PS417_00750 0.35 +0.4 159,754 - PS417_00750 0.35 -1.1 159,805 - PS417_00750 0.39 +2.1 159,805 - PS417_00750 0.39 +0.5 159,805 - PS417_00750 0.39 +1.2 159,805 - PS417_00750 0.39 +0.5 159,996 - PS417_00750 0.53 +0.2 160,095 + PS417_00750 0.61 -0.8 160,096 - PS417_00750 0.61 +0.2 160,284 - PS417_00750 0.75 +0.1 160,284 - PS417_00750 0.75 +1.5 160,284 - PS417_00750 0.75 +1.5 160,309 - PS417_00750 0.77 +0.1 160,651 + +0.7 160,651 + +0.3 160,651 + -1.1 160,652 - -0.2 160,652 - +0.6 160,652 - -0.4 160,805 + PS417_00755 0.37 +0.7 161,106 - +0.9 161,157 + -0.7 161,221 + -0.1 161,222 - -0.4 161,261 - -0.1 161,344 - +0.9 161,344 - +0.2 161,434 + -0.8 161,779 - PS417_00760 0.18 +1.1 161,779 - PS417_00760 0.18 -1.5 161,874 + PS417_00760 0.23 +0.9 161,874 + PS417_00760 0.23 -0.8
Or see this region's nucleotide sequence