Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03890 and PS417_03895 overlap by 4 nucleotides PS417_03895 and PS417_03900 overlap by 4 nucleotides PS417_03900 and PS417_03905 are separated by 199 nucleotides PS417_03905 and PS417_03910 are separated by 35 nucleotides
PS417_03890: PS417_03890 - dephospho-CoA kinase, at 870,827 to 871,450
_03890
PS417_03895: PS417_03895 - methyltransferase, at 871,447 to 872,313
_03895
PS417_03900: PS417_03900 - type II secretion system protein F, at 872,310 to 873,518
_03900
PS417_03905: PS417_03905 - fimbrial protein, at 873,718 to 874,134
_03905
PS417_03910: PS417_03910 - pilus assembly protein, at 874,170 to 875,570
_03910
Position (kb) 872
873
874 Strain fitness (log2 ratio) -1
0
1
2
3 at 871.473 kb on - strand at 871.843 kb on + strand, within PS417_03895 at 871.844 kb on - strand, within PS417_03895 at 871.844 kb on - strand, within PS417_03895 at 872.052 kb on - strand, within PS417_03895 at 872.083 kb on + strand, within PS417_03895 at 872.132 kb on + strand, within PS417_03895 at 872.344 kb on + strand at 872.344 kb on + strand at 872.449 kb on + strand, within PS417_03900 at 872.450 kb on - strand, within PS417_03900 at 872.450 kb on - strand, within PS417_03900 at 872.580 kb on + strand, within PS417_03900 at 872.580 kb on + strand, within PS417_03900 at 873.010 kb on + strand, within PS417_03900 at 873.011 kb on - strand, within PS417_03900 at 873.039 kb on + strand, within PS417_03900 at 873.131 kb on - strand, within PS417_03900 at 873.131 kb on - strand, within PS417_03900 at 873.281 kb on + strand, within PS417_03900 at 873.553 kb on + strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.558 kb on + strand at 873.559 kb on - strand at 873.648 kb on - strand at 873.663 kb on + strand at 873.701 kb on + strand at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 874.099 kb on + strand at 874.099 kb on + strand at 874.139 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 871,473 - +1.4 871,843 + PS417_03895 0.46 +0.5 871,844 - PS417_03895 0.46 +1.4 871,844 - PS417_03895 0.46 +0.4 872,052 - PS417_03895 0.70 +2.4 872,083 + PS417_03895 0.73 +0.8 872,132 + PS417_03895 0.79 -0.8 872,344 + -0.1 872,344 + +0.5 872,449 + PS417_03900 0.11 +1.0 872,450 - PS417_03900 0.12 +0.8 872,450 - PS417_03900 0.12 -0.2 872,580 + PS417_03900 0.22 +0.5 872,580 + PS417_03900 0.22 +0.0 873,010 + PS417_03900 0.58 +3.7 873,011 - PS417_03900 0.58 +0.0 873,039 + PS417_03900 0.60 +1.1 873,131 - PS417_03900 0.68 +1.8 873,131 - PS417_03900 0.68 +0.7 873,281 + PS417_03900 0.80 -0.0 873,553 + +1.4 873,554 - -0.2 873,554 - -0.3 873,554 - -0.6 873,554 - -1.3 873,554 - -0.2 873,558 + +0.7 873,559 - -0.1 873,648 - +0.1 873,663 + -0.5 873,701 + +1.1 873,806 - PS417_03905 0.21 +2.0 873,806 - PS417_03905 0.21 +0.1 873,806 - PS417_03905 0.21 -1.4 873,806 - PS417_03905 0.21 -1.2 873,806 - PS417_03905 0.21 +0.0 874,099 + +1.4 874,099 + -0.2 874,139 + -1.2
Or see this region's nucleotide sequence