Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03785 and PS417_03790 overlap by 4 nucleotides PS417_03790 and PS417_03795 are separated by 7 nucleotides PS417_03795 and PS417_03800 are separated by 11 nucleotides PS417_03800 and PS417_03805 are separated by 62 nucleotides
PS417_03785: PS417_03785 - pilus assembly protein PilV, at 856,750 to 857,235
_03785
PS417_03790: PS417_03790 - pilus assembly protein PilW, at 857,232 to 857,939
_03790
PS417_03795: PS417_03795 - pilus assembly protein PilX, at 857,947 to 858,477
_03795
PS417_03800: PS417_03800 - pilus assembly protein, at 858,489 to 858,890
_03800
PS417_03805: PS417_03805 - D-amino acid oxidase, at 858,953 to 860,062
_03805
Position (kb) 857
858
859 Strain fitness (log2 ratio) -1
0
1
2 at 857.327 kb on + strand, within PS417_03790 at 857.610 kb on + strand, within PS417_03790 at 857.611 kb on - strand, within PS417_03790 at 857.673 kb on + strand, within PS417_03790 at 857.674 kb on - strand, within PS417_03790 at 857.901 kb on + strand at 857.902 kb on - strand at 857.965 kb on - strand at 857.965 kb on - strand at 858.097 kb on - strand, within PS417_03795 at 858.259 kb on - strand, within PS417_03795 at 858.330 kb on - strand, within PS417_03795 at 858.412 kb on + strand at 858.413 kb on - strand at 858.423 kb on - strand, within PS417_03795 at 858.423 kb on - strand, within PS417_03795 at 858.423 kb on - strand, within PS417_03795 at 858.512 kb on + strand at 858.513 kb on - strand at 858.661 kb on - strand, within PS417_03800 at 858.681 kb on - strand at 858.681 kb on - strand, within PS417_03800 at 858.720 kb on - strand, within PS417_03800 at 858.720 kb on - strand, within PS417_03800 at 858.765 kb on - strand, within PS417_03800 at 858.972 kb on + strand at 859.113 kb on - strand, within PS417_03805 at 859.113 kb on - strand, within PS417_03805 at 859.124 kb on + strand, within PS417_03805 at 859.359 kb on - strand, within PS417_03805 at 859.373 kb on + strand, within PS417_03805 at 859.374 kb on - strand, within PS417_03805
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 857,327 + PS417_03790 0.13 -0.7 857,610 + PS417_03790 0.53 +1.4 857,611 - PS417_03790 0.54 -1.0 857,673 + PS417_03790 0.62 +0.7 857,674 - PS417_03790 0.62 +0.2 857,901 + +0.8 857,902 - +0.5 857,965 - +0.5 857,965 - +0.2 858,097 - PS417_03795 0.28 -0.6 858,259 - PS417_03795 0.59 +1.0 858,330 - PS417_03795 0.72 -0.1 858,412 + -0.2 858,413 - +0.6 858,423 - PS417_03795 0.90 +0.4 858,423 - PS417_03795 0.90 -0.1 858,423 - PS417_03795 0.90 +2.5 858,512 + -1.1 858,513 - +0.4 858,661 - PS417_03800 0.43 +0.3 858,681 - +2.4 858,681 - PS417_03800 0.48 -0.5 858,720 - PS417_03800 0.57 -0.3 858,720 - PS417_03800 0.57 -0.6 858,765 - PS417_03800 0.69 +1.0 858,972 + -0.3 859,113 - PS417_03805 0.14 +1.5 859,113 - PS417_03805 0.14 +0.0 859,124 + PS417_03805 0.15 +0.7 859,359 - PS417_03805 0.37 +0.4 859,373 + PS417_03805 0.38 +1.1 859,374 - PS417_03805 0.38 -1.2
Or see this region's nucleotide sequence