Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26820 and PS417_26825 overlap by 1 nucleotides PS417_26825 and PS417_26830 are separated by 71 nucleotides PS417_26830 and PS417_26835 are separated by 29 nucleotides PS417_26835 and PS417_26840 are separated by 33 nucleotides
PS417_26820: PS417_26820 - peptidase M16, at 5,791,437 to 5,792,927
_26820
PS417_26825: PS417_26825 - 16S rRNA methyltransferase, at 5,792,927 to 5,793,535
_26825
PS417_26830: PS417_26830 - alpha/beta hydrolase, at 5,793,607 to 5,794,602
_26830
PS417_26835: PS417_26835 - 3-mercaptopyruvate sulfurtransferase, at 5,794,632 to 5,795,495
_26835
PS417_26840: PS417_26840 - TetR family transcriptional regulator, at 5,795,529 to 5,796,200
_26840
Position (kb) 5793
5794
5795 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5792.724 kb on + strand, within PS417_26820 at 5792.724 kb on + strand, within PS417_26820 at 5792.724 kb on + strand, within PS417_26820 at 5792.782 kb on + strand at 5792.926 kb on - strand at 5793.419 kb on + strand, within PS417_26825 at 5793.503 kb on + strand at 5793.507 kb on - strand at 5793.595 kb on - strand at 5793.622 kb on - strand at 5793.696 kb on + strand at 5793.696 kb on + strand at 5793.835 kb on + strand, within PS417_26830 at 5793.937 kb on + strand, within PS417_26830 at 5793.938 kb on - strand, within PS417_26830 at 5793.938 kb on - strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.013 kb on - strand, within PS417_26830 at 5794.013 kb on - strand, within PS417_26830 at 5794.165 kb on + strand, within PS417_26830 at 5794.198 kb on + strand, within PS417_26830 at 5794.199 kb on - strand, within PS417_26830 at 5794.354 kb on + strand, within PS417_26830 at 5794.357 kb on + strand, within PS417_26830 at 5794.381 kb on + strand, within PS417_26830 at 5794.455 kb on - strand, within PS417_26830 at 5794.552 kb on + strand at 5794.553 kb on - strand at 5794.555 kb on + strand at 5794.555 kb on + strand at 5794.569 kb on + strand at 5794.626 kb on + strand at 5794.627 kb on - strand at 5794.702 kb on + strand at 5794.703 kb on - strand at 5794.703 kb on - strand at 5794.709 kb on + strand at 5794.908 kb on - strand, within PS417_26835 at 5795.213 kb on - strand, within PS417_26835 at 5795.213 kb on - strand, within PS417_26835 at 5795.506 kb on + strand at 5795.530 kb on + strand at 5795.531 kb on - strand at 5795.580 kb on + strand at 5795.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,792,724 + PS417_26820 0.86 +1.2 5,792,724 + PS417_26820 0.86 -0.3 5,792,724 + PS417_26820 0.86 -0.8 5,792,782 + -0.1 5,792,926 - -1.3 5,793,419 + PS417_26825 0.81 +1.5 5,793,503 + +1.5 5,793,507 - -0.8 5,793,595 - -0.3 5,793,622 - +0.3 5,793,696 + -0.1 5,793,696 + +0.3 5,793,835 + PS417_26830 0.23 +4.7 5,793,937 + PS417_26830 0.33 -1.1 5,793,938 - PS417_26830 0.33 -0.2 5,793,938 - PS417_26830 0.33 +0.0 5,794,012 + PS417_26830 0.41 +0.5 5,794,012 + PS417_26830 0.41 -0.1 5,794,012 + PS417_26830 0.41 +0.5 5,794,013 - PS417_26830 0.41 +1.0 5,794,013 - PS417_26830 0.41 -0.3 5,794,165 + PS417_26830 0.56 +2.6 5,794,198 + PS417_26830 0.59 -0.1 5,794,199 - PS417_26830 0.59 -1.8 5,794,354 + PS417_26830 0.75 -0.3 5,794,357 + PS417_26830 0.75 -0.3 5,794,381 + PS417_26830 0.78 +0.0 5,794,455 - PS417_26830 0.85 -0.2 5,794,552 + +0.1 5,794,553 - -0.7 5,794,555 + +0.4 5,794,555 + +0.5 5,794,569 + -1.3 5,794,626 + +0.3 5,794,627 - -1.5 5,794,702 + +0.2 5,794,703 - +0.7 5,794,703 - -0.8 5,794,709 + +0.2 5,794,908 - PS417_26835 0.32 -0.3 5,795,213 - PS417_26835 0.67 -0.3 5,795,213 - PS417_26835 0.67 -0.0 5,795,506 + +1.6 5,795,530 + +1.4 5,795,531 - +0.9 5,795,580 + +0.9 5,795,581 - -0.2
Or see this region's nucleotide sequence