Strain Fitness in Pseudomonas simiae WCS417 around PS417_25375

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
5,493,587	-				-0.5
5,493,587	-				+4.3
5,493,610	-				-0.8
5,493,610	-				+0.4
5,493,707	+				+0.9
5,493,812	+				-1.1
5,493,813	-				-0.5
5,493,869	-				-0.1
5,493,885	+				+1.0
5,493,889	+				+0.3
5,493,889	+				+0.3
5,493,890	-				-0.5
5,493,890	-				+0.5
5,493,891	+				-0.2
5,493,933	+				+0.7
5,493,933	+				+0.5
5,493,934	-				-0.5
5,493,942	+				+1.8
5,493,942	+				-0.1
5,493,944	+				+0.5
5,493,944	+				+0.5
5,493,945	-				+1.1
5,493,945	-				-0.8
5,494,116	+				-1.5
5,494,116	+				-0.6
5,494,167	-				+1.6
5,494,170	-				-0.2
5,494,228	+				+0.5
5,494,228	+				-0.3
5,494,311	-				-0.2
5,494,331	-				+1.1
5,494,381	+				+0.7
5,494,382	-				+0.8
5,494,394	-				+0.4
5,494,424	+				-0.7
5,494,439	+				-0.1
5,494,440	-				-0.4
5,494,440	-				+1.2
5,494,440	-				-1.1
5,494,444	-				+0.7
5,494,508	+				-1.3
5,494,515	+				-0.5
5,494,518	+				-0.4
5,494,558	+				-0.1
5,494,563	+				+1.5
5,494,563	+				-0.0
5,494,564	-				-0.2
5,494,564	-				-0.9
5,494,564	-				-1.5
5,494,575	+				+0.6
5,494,576	-				-0.6
5,494,597	+				-1.1
5,494,598	-				+2.0
5,494,633	+				+0.9
5,494,633	+				+1.5
5,494,713	+		PS417_25375	0.12	-0.9
5,494,722	-		PS417_25375	0.12	+0.3
5,494,723	+		PS417_25375	0.12	+0.4
5,494,723	+		PS417_25375	0.12	+0.5
5,494,723	+		PS417_25375	0.12	-0.9
5,494,724	-		PS417_25375	0.12	+0.3
5,494,724	-		PS417_25375	0.12	-1.7
5,494,724	-		PS417_25375	0.12	+5.4
5,494,724	-		PS417_25375	0.12	-0.5
5,494,724	-		PS417_25375	0.12	+1.5
5,494,724	-		PS417_25375	0.12	-0.9
5,494,724	-		PS417_25375	0.12	+1.5
5,494,727	+		PS417_25375	0.12	-0.9
5,494,727	+		PS417_25375	0.12	+0.2
5,494,809	+		PS417_25375	0.16	+0.8
5,494,866	+		PS417_25375	0.18	+0.2
5,494,866	+		PS417_25375	0.18	+1.0
5,494,866	+		PS417_25375	0.18	+1.7
5,494,866	+		PS417_25375	0.18	+0.1
5,494,866	+		PS417_25375	0.18	-0.3
5,494,867	-		PS417_25375	0.18	+3.8
5,495,012	+		PS417_25375	0.24	-1.0
5,495,027	+		PS417_25375	0.25	+0.0
5,495,161	+		PS417_25375	0.30	-2.9
5,495,161	+		PS417_25375	0.30	-1.1
5,495,162	-		PS417_25375	0.30	-0.9
5,495,162	-		PS417_25375	0.30	-0.7
5,495,162	-		PS417_25375	0.30	+1.6
5,495,310	+		PS417_25375	0.36	-1.7
5,495,311	-		PS417_25375	0.36	+0.5
5,495,321	-		PS417_25375	0.36	-0.8
5,495,462	+		PS417_25375	0.42	+1.8
5,495,516	+		PS417_25375	0.44	-0.8
5,495,516	+		PS417_25375	0.44	-0.0
5,495,516	+		PS417_25375	0.44	+0.0
5,495,516	+		PS417_25375	0.44	+0.4
5,495,516	+		PS417_25375	0.44	+0.0
5,495,517	-		PS417_25375	0.44	-0.1
5,495,517	-		PS417_25375	0.44	-0.5
5,495,517	-		PS417_25375	0.44	-0.7
5,495,517	-		PS417_25375	0.44	-1.0
5,495,517	-				-0.5
5,495,517	-		PS417_25375	0.44	+0.7
5,495,517	-		PS417_25375	0.44	-0.1
5,495,518	+		PS417_25375	0.44	+1.0
5,495,519	-		PS417_25375	0.44	+2.0
5,495,528	+		PS417_25375	0.45	-0.6
5,495,679	+		PS417_25375	0.51	-0.7
5,495,750	-		PS417_25375	0.54	+1.8
5,495,750	-		PS417_25375	0.54	+0.5
5,495,772	-		PS417_25375	0.55	+2.1
5,495,794	-		PS417_25375	0.55	-0.5
5,495,807	+		PS417_25375	0.56	+1.0
5,495,807	+		PS417_25375	0.56	-0.5
5,495,808	-		PS417_25375	0.56	+1.1
5,495,808	-		PS417_25375	0.56	+0.3
5,495,809	+		PS417_25375	0.56	-0.2
5,495,809	+		PS417_25375	0.56	-0.1
5,495,810	-		PS417_25375	0.56	-0.9
5,495,871	+		PS417_25375	0.59	+0.8
5,495,871	+		PS417_25375	0.59	-2.0
5,495,872	-		PS417_25375	0.59	+0.6
5,495,958	+		PS417_25375	0.62	+1.5
5,495,958	+		PS417_25375	0.62	-0.9
5,495,958	+		PS417_25375	0.62	-0.5
5,495,958	+		PS417_25375	0.62	-0.5
5,495,958	+		PS417_25375	0.62	+0.8
5,495,958	+		PS417_25375	0.62	-0.8
5,495,959	-		PS417_25375	0.62	+1.0
5,495,959	-		PS417_25375	0.62	+1.5
5,495,959	-		PS417_25375	0.62	-1.3
5,495,959	-		PS417_25375	0.62	-1.1
5,495,960	+		PS417_25375	0.62	-0.7
5,495,969	+		PS417_25375	0.62	+0.5
5,496,022	-		PS417_25375	0.65	-0.6
5,496,068	+				-0.3
5,496,077	+		PS417_25375	0.67	+0.3
5,496,077	+		PS417_25375	0.67	+0.0
5,496,078	-		PS417_25375	0.67	-0.9
5,496,194	+		PS417_25375	0.72	+0.4
5,496,305	+		PS417_25375	0.76	-0.3
5,496,316	+		PS417_25375	0.76	-0.2
5,496,316	+		PS417_25375	0.76	+0.6
5,496,316	+		PS417_25375	0.76	+0.2
5,496,316	+		PS417_25375	0.76	-1.0
5,496,316	+		PS417_25375	0.76	+1.8
5,496,316	+		PS417_25375	0.76	+0.8
5,496,317	-		PS417_25375	0.77	+0.7
5,496,317	-		PS417_25375	0.77	+0.4
5,496,375	-		PS417_25375	0.79	-0.1
5,496,376	+		PS417_25375	0.79	+0.5
5,496,376	+		PS417_25375	0.79	-0.0
5,496,376	+		PS417_25375	0.79	+0.0
5,496,377	-		PS417_25375	0.79	-1.5
5,496,377	-		PS417_25375	0.79	+0.7
5,496,377	-		PS417_25375	0.79	-0.5
5,496,377	-		PS417_25375	0.79	-0.6
5,496,377	-		PS417_25375	0.79	-0.9
5,496,377	-		PS417_25375	0.79	-0.3
5,496,377	-				+0.5
5,496,435	-		PS417_25375	0.81	+3.8
5,496,435	-		PS417_25375	0.81	-0.5
5,496,460	-		PS417_25375	0.82	-0.1
5,496,506	+		PS417_25375	0.84	+0.5
5,496,507	-		PS417_25375	0.84	-1.5
5,496,507	-		PS417_25375	0.84	+0.0
5,496,510	-		PS417_25375	0.84	-0.1
5,496,730	+				+0.4
5,496,736	+				-0.6
5,496,736	+				+0.4
5,496,737	-				-0.4
5,496,768	+				-0.4
5,496,768	+				-0.3
5,496,769	-				+1.2
5,496,769	-				-0.4
5,496,804	-				+1.4
5,496,882	+				-0.4
5,496,883	-				-0.5
5,496,945	+				+0.4
5,496,951	+				-0.2
5,496,978	-				-0.4
5,497,016	-				+0.2
5,497,028	-				-2.5
5,497,028	-				+0.5
5,497,028	-				-0.4
5,497,148	+				+0.5
5,497,149	-				+2.7
5,497,149	-				+0.5
5,497,151	+				-0.5
5,497,151	+				+0.5
5,497,152	-				-1.1
5,497,167	+				-0.0
5,497,167	+				-0.4
5,497,167	+				+0.4
5,497,242	-				+1.5
5,497,250	+				+1.8
5,497,323	+				+0.2
5,497,323	+				-1.6
5,497,324	-				-1.2
5,497,324	-				-1.2
5,497,338	-				-0.5
5,497,355	+				+0.1
5,497,432	+				+3.0
5,497,432	+				-0.3
5,497,432	+				-1.5
5,497,432	+				-1.9
5,497,433	-				-2.0
5,497,433	-				-0.3
5,497,433	-				-0.9
5,497,442	+		PS417_25380	0.10	-0.2
5,497,508	+		PS417_25380	0.45	-2.0
5,497,523	-				+0.5
5,497,525	+		PS417_25380	0.54	-0.4
5,497,525	+		PS417_25380	0.54	+1.5
5,497,525	+		PS417_25380	0.54	+0.9
5,497,562	+		PS417_25380	0.73	+0.1
5,497,606	-				-1.1
5,497,620	+				+1.9
5,497,652	+				+0.5
5,497,652	+				+1.2
5,497,653	-				+0.5
5,497,655	+				-0.7
5,497,655	+				-1.1
5,497,655	+				+2.1
5,497,656	-				-0.5
5,497,695	+				-1.9
5,497,723	+				+1.7
5,497,724	-				+0.1
5,497,724	-				+0.4
5,497,727	+				-0.4
5,497,755	+				-0.4
5,497,756	-				+0.8
5,497,767	+				+1.0
5,497,768	-				+0.1
5,497,768	-				+0.5