Strain Fitness in Pseudomonas simiae WCS417 around PS417_24950

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
5,406,662	-		PS417_24945	0.28	-0.8
5,406,723	-		PS417_24945	0.37	+1.4
5,406,723	-		PS417_24945	0.37	-0.3
5,406,738	+		PS417_24945	0.39	-0.6
5,406,767	-		PS417_24945	0.43	-1.0
5,406,768	+		PS417_24945	0.43	+1.1
5,406,919	+		PS417_24945	0.65	+0.2
5,406,979	+		PS417_24945	0.73	+0.2
5,406,979	+		PS417_24945	0.73	+0.3
5,406,988	-		PS417_24945	0.75	-0.1
5,406,988	-		PS417_24945	0.75	-0.3
5,406,993	+				+0.4
5,406,993	+		PS417_24945	0.75	+0.9
5,406,993	+		PS417_24945	0.75	+0.7
5,406,994	-		PS417_24945	0.76	-1.9
5,406,994	-		PS417_24945	0.76	+0.0
5,406,994	-		PS417_24945	0.76	+0.7
5,407,202	-				-1.4
5,407,255	+				-1.4
5,407,256	-				-0.7
5,407,271	+				-0.1
5,407,412	-				-0.9
5,407,560	+				-1.4
5,407,560	+				+1.2
5,407,560	+				+1.0
5,407,560	+				+1.1
5,407,560	+				-0.6
5,407,561	-				-0.2
5,407,561	-				-0.4
5,407,561	-				-1.4
5,407,561	-				-1.2
5,407,561	-				+0.2
5,407,561	-				-0.2
5,407,624	+				+1.0
5,407,625	-				+0.1
5,407,625	-				+0.7
5,407,625	-				-0.5
5,407,671	-				+1.6
5,407,753	-				-0.6
5,407,765	+				+0.2
5,407,766	-				-1.9
5,407,766	-				+1.4
5,407,914	+		PS417_24950	0.12	+0.0
5,407,914	+		PS417_24950	0.12	+0.2
5,407,915	-		PS417_24950	0.12	-0.1
5,407,915	-		PS417_24950	0.12	+0.6
5,407,922	+		PS417_24950	0.12	+1.4
5,407,922	+		PS417_24950	0.12	+0.5
5,407,922	+		PS417_24950	0.12	-1.0
5,407,923	-		PS417_24950	0.12	-0.2
5,407,923	-		PS417_24950	0.12	-0.2
5,407,923	-		PS417_24950	0.12	-0.7
5,407,923	-		PS417_24950	0.12	+0.2
5,407,925	+		PS417_24950	0.12	-0.1
5,407,926	-		PS417_24950	0.12	-0.1
5,407,948	+		PS417_24950	0.13	+0.6
5,407,948	+		PS417_24950	0.13	+0.8
5,407,948	+		PS417_24950	0.13	+2.9
5,407,948	+		PS417_24950	0.13	-0.0
5,407,948	+		PS417_24950	0.13	-0.7
5,407,949	-				+1.4
5,407,949	-		PS417_24950	0.13	-0.0
5,407,998	+		PS417_24950	0.14	-0.3
5,407,998	+		PS417_24950	0.14	+3.0
5,407,999	-		PS417_24950	0.14	-0.2
5,408,064	+		PS417_24950	0.16	+0.1
5,408,064	+		PS417_24950	0.16	-1.9
5,408,065	-		PS417_24950	0.16	-0.4
5,408,100	+		PS417_24950	0.17	+0.4
5,408,100	+		PS417_24950	0.17	+0.7
5,408,100	+		PS417_24950	0.17	-0.4
5,408,101	-		PS417_24950	0.17	+0.8
5,408,101	-		PS417_24950	0.17	-2.4
5,408,101	-		PS417_24950	0.17	-0.2
5,408,101	-		PS417_24950	0.17	-0.7
5,408,178	+		PS417_24950	0.19	-1.1
5,408,179	-		PS417_24950	0.19	+0.8
5,408,179	-		PS417_24950	0.19	-3.3
5,408,179	-		PS417_24950	0.19	-1.2
5,408,201	-		PS417_24950	0.20	-1.2
5,408,235	-				+0.4
5,408,235	-		PS417_24950	0.21	+0.6
5,408,295	-		PS417_24950	0.22	+0.3
5,408,306	+		PS417_24950	0.23	+0.2
5,408,345	+		PS417_24950	0.24	-2.8
5,408,345	+		PS417_24950	0.24	+1.4
5,408,427	+		PS417_24950	0.26	+0.1
5,408,428	-		PS417_24950	0.26	-0.4
5,408,428	-		PS417_24950	0.26	+0.8
5,408,438	-		PS417_24950	0.26	-0.4
5,408,494	+		PS417_24950	0.28	+2.3
5,408,494	+		PS417_24950	0.28	+1.2
5,408,495	-				+1.4
5,408,495	-		PS417_24950	0.28	+0.6
5,408,495	-		PS417_24950	0.28	-1.2
5,408,521	+		PS417_24950	0.29	+0.5
5,408,521	+		PS417_24950	0.29	+1.7
5,408,521	+		PS417_24950	0.29	-0.9
5,408,521	+		PS417_24950	0.29	-2.2
5,408,522	-		PS417_24950	0.29	+0.7
5,408,522	-		PS417_24950	0.29	-0.3
5,408,634	+		PS417_24950	0.32	-1.4
5,408,634	+		PS417_24950	0.32	+0.8
5,408,634	+		PS417_24950	0.32	+1.4
5,408,635	-		PS417_24950	0.32	-1.3
5,408,646	+		PS417_24950	0.32	+1.3
5,408,711	+		PS417_24950	0.34	-0.2
5,408,729	+		PS417_24950	0.34	-1.0
5,408,877	+		PS417_24950	0.38	+0.7
5,408,878	-		PS417_24950	0.38	-0.2
5,408,883	-		PS417_24950	0.39	-0.2
5,408,997	-		PS417_24950	0.42	+1.7
5,408,997	-		PS417_24950	0.42	+0.1
5,408,997	-		PS417_24950	0.42	+0.4
5,409,090	-		PS417_24950	0.44	+0.3
5,409,090	-		PS417_24950	0.44	-0.3
5,409,090	-		PS417_24950	0.44	+1.1
5,409,090	-		PS417_24950	0.44	+0.2
5,409,090	-		PS417_24950	0.44	+0.4
5,409,093	+		PS417_24950	0.44	+0.2
5,409,093	+		PS417_24950	0.44	-0.7
5,409,094	-		PS417_24950	0.44	-2.2
5,409,094	-				+1.8
5,409,094	-		PS417_24950	0.44	+3.2
5,409,094	-		PS417_24950	0.44	+0.0
5,409,094	-		PS417_24950	0.44	-0.2
5,409,108	+		PS417_24950	0.45	+0.1
5,409,108	+		PS417_24950	0.45	+0.8
5,409,108	+		PS417_24950	0.45	+1.2
5,409,109	-		PS417_24950	0.45	+0.8
5,409,109	-		PS417_24950	0.45	+2.0
5,409,109	-		PS417_24950	0.45	+1.2
5,409,110	+		PS417_24950	0.45	+1.0
5,409,110	+		PS417_24950	0.45	+0.2
5,409,111	-				-0.6
5,409,131	-		PS417_24950	0.45	+0.6
5,409,162	+		PS417_24950	0.46	+0.1
5,409,162	+		PS417_24950	0.46	-1.1
5,409,162	+		PS417_24950	0.46	-0.2
5,409,163	-		PS417_24950	0.46	+0.7
5,409,166	-		PS417_24950	0.46	-0.2
5,409,166	-		PS417_24950	0.46	+0.2
5,409,166	-		PS417_24950	0.46	-0.3
5,409,166	-		PS417_24950	0.46	+3.8
5,409,223	+		PS417_24950	0.48	-1.9
5,409,223	+		PS417_24950	0.48	+1.9
5,409,267	+		PS417_24950	0.49	+0.6
5,409,268	-		PS417_24950	0.49	-0.3
5,409,268	-		PS417_24950	0.49	+1.1
5,409,268	-		PS417_24950	0.49	-0.6
5,409,312	+		PS417_24950	0.50	-2.4
5,409,312	+		PS417_24950	0.50	+0.6
5,409,313	-		PS417_24950	0.50	-0.5
5,409,313	-		PS417_24950	0.50	-0.9
5,409,332	+		PS417_24950	0.51	+0.6
5,409,333	-		PS417_24950	0.51	-1.5
5,409,333	-		PS417_24950	0.51	+0.8
5,409,346	+		PS417_24950	0.51	-0.1
5,409,346	+		PS417_24950	0.51	+1.8
5,409,346	+		PS417_24950	0.51	+1.4
5,409,346	+		PS417_24950	0.51	+1.4
5,409,346	+		PS417_24950	0.51	+1.0
5,409,346	+		PS417_24950	0.51	-0.2
5,409,346	+		PS417_24950	0.51	-1.1
5,409,346	+		PS417_24950	0.51	+0.4
5,409,347	-		PS417_24950	0.51	-0.6
5,409,347	-		PS417_24950	0.51	+2.8
5,409,347	-		PS417_24950	0.51	-0.9
5,409,349	+		PS417_24950	0.51	-0.2
5,409,349	+		PS417_24950	0.51	+0.9
5,409,349	+		PS417_24950	0.51	+0.7
5,409,349	+		PS417_24950	0.51	+0.3
5,409,350	-				+0.4
5,409,350	-		PS417_24950	0.51	+1.2
5,409,402	+		PS417_24950	0.53	+1.3
5,409,403	-		PS417_24950	0.53	+0.1
5,409,414	+		PS417_24950	0.53	-0.2
5,409,415	-		PS417_24950	0.53	+3.7
5,409,415	-		PS417_24950	0.53	+0.1
5,409,492	+		PS417_24950	0.55	-1.2
5,409,492	+		PS417_24950	0.55	+1.8
5,409,492	+		PS417_24950	0.55	+0.7
5,409,493	-		PS417_24950	0.55	-1.3
5,409,493	-		PS417_24950	0.55	-2.0
5,409,518	+		PS417_24950	0.56	+2.1
5,409,518	+		PS417_24950	0.56	+0.8
5,409,677	+		PS417_24950	0.61	+0.8
5,409,678	-		PS417_24950	0.61	+1.1
5,409,691	+		PS417_24950	0.61	+1.1
5,409,692	-		PS417_24950	0.61	+0.7
5,409,692	-		PS417_24950	0.61	-1.7
5,409,725	+		PS417_24950	0.62	-0.5
5,409,784	+		PS417_24950	0.63	+0.4
5,409,784	+		PS417_24950	0.63	+4.3
5,410,096	-		PS417_24950	0.72	+0.5
5,410,193	+		PS417_24950	0.75	+0.1
5,410,210	+		PS417_24950	0.75	-1.7
5,410,210	+		PS417_24950	0.75	-0.4
5,410,210	+				-0.6
5,410,246	+		PS417_24950	0.76	-1.6
5,410,246	+		PS417_24950	0.76	+0.1
5,410,247	-		PS417_24950	0.76	+0.4
5,410,247	-		PS417_24950	0.76	-1.4
5,410,247	-		PS417_24950	0.76	+0.3
5,410,281	-		PS417_24950	0.77	+0.1
5,410,336	+		PS417_24950	0.79	-0.3
5,410,337	-		PS417_24950	0.79	-0.6
5,410,337	-		PS417_24950	0.79	-0.4
5,410,337	-		PS417_24950	0.79	-0.4
5,410,420	+		PS417_24950	0.81	+1.1
5,410,421	-		PS417_24950	0.81	-0.0
5,410,440	+		PS417_24950	0.82	+0.4
5,410,440	+		PS417_24950	0.82	-0.3
5,410,444	+		PS417_24950	0.82	+1.1
5,410,445	-		PS417_24950	0.82	-0.3
5,410,445	-		PS417_24950	0.82	-0.3
5,410,445	-		PS417_24950	0.82	-2.7
5,410,445	-		PS417_24950	0.82	+0.6
5,410,451	+		PS417_24950	0.82	-0.4
5,410,451	+		PS417_24950	0.82	-1.0
5,410,451	+		PS417_24950	0.82	+0.9
5,410,451	+		PS417_24950	0.82	+0.8
5,410,451	+		PS417_24950	0.82	+0.0
5,410,452	-		PS417_24950	0.82	-0.3
5,410,452	-		PS417_24950	0.82	-0.0
5,410,452	-		PS417_24950	0.82	+0.2
5,410,452	-		PS417_24950	0.82	-0.8
5,410,560	+		PS417_24950	0.85	+0.3
5,410,693	+		PS417_24950	0.89	-0.3
5,410,694	-		PS417_24950	0.89	+1.4
5,410,694	-		PS417_24950	0.89	-0.9
5,410,827	+				+0.2
5,410,827	+				-0.0
5,410,828	-				-0.5
5,410,828	-				+0.1
5,410,829	+				+0.2
5,410,829	+				+1.1
5,410,829	+				-1.0
5,410,829	+				-0.6
5,410,829	+				+0.1
5,410,856	+				+1.0
5,410,857	-				+0.4
5,410,882	+				+0.5
5,410,996	+				+0.6
5,410,997	-				-0.3
5,411,101	-				+1.2
5,411,104	+				+0.7
5,411,105	-				-1.2
5,411,108	+				+0.8
5,411,108	+				-0.3
5,411,108	+				-0.7
5,411,108	+				-0.4
5,411,108	+				+2.4
5,411,108	+				-1.1
5,411,108	+				+0.8
5,411,108	+				-1.1
5,411,109	-				-0.5
5,411,109	-				+0.4
5,411,125	+				-1.1
5,411,179	+				+0.7
5,411,218	+				+0.3
5,411,219	-				-0.0
5,411,219	-				-0.6
5,411,238	+				-0.1
5,411,238	+				+0.8
5,411,238	+				+0.2
5,411,239	-				-0.1
5,411,239	-				+0.9
5,411,239	-				+0.8
5,411,239	-				-0.7
5,411,239	-				-0.1
5,411,239	-				-0.4
5,411,239	-				-0.2
5,411,239	-				+0.0
5,411,368	+				-0.3
5,411,378	+				-1.2
5,411,378	+				+0.1
5,411,379	-				-0.7
5,411,379	-				-1.2
5,411,408	+				-1.4
5,411,423	+				-0.4
5,411,445	-				+1.3
5,411,445	-				-0.2
5,411,480	+				-0.6
5,411,480	+				-0.2
5,411,535	-				+0.8
5,411,575	+				-1.5
5,411,575	+				+0.3
5,411,576	-				-1.7
5,411,576	-				-0.9
5,411,577	+				+5.2
5,411,577	+				-0.4
5,411,578	-				+0.2
5,411,578	-				+1.4
5,411,578	-				-1.6
5,411,578	-				-2.3
5,411,578	-				+2.4
5,411,633	+				+2.2
5,411,633	+				-0.9
5,411,634	-				+2.4
5,411,663	+				-0.6
5,411,663	+				-1.7
5,411,664	-				-0.6
5,411,683	+				-0.2
5,411,684	-				-1.0
5,411,725	+				+2.0
5,411,726	-				-0.2
5,411,726	-				+0.1
5,411,739	+				+0.1
5,411,740	-				-1.4
5,411,763	+				-0.6
5,411,764	-				+0.1
5,411,764	-				+0.2
5,411,797	+		PS417_24955	0.17	+0.0
5,411,797	+		PS417_24955	0.17	-0.1
5,411,798	-		PS417_24955	0.18	-0.2
5,411,802	+		PS417_24955	0.19	-0.6
5,411,802	+		PS417_24955	0.19	-0.2
5,411,803	-		PS417_24955	0.20	+2.6
5,411,803	-		PS417_24955	0.20	+0.7
5,411,803	-		PS417_24955	0.20	-0.6
5,411,803	-		PS417_24955	0.20	+0.4
5,411,803	-		PS417_24955	0.20	-0.5
5,411,803	-				+4.5
5,411,803	-		PS417_24955	0.20	-1.6
5,411,855	+		PS417_24955	0.42	-0.2
5,411,855	+		PS417_24955	0.42	-0.2
5,411,855	+		PS417_24955	0.42	+1.0
5,411,856	-		PS417_24955	0.42	-1.3
5,411,860	+		PS417_24955	0.44	-1.4
5,411,860	+		PS417_24955	0.44	-0.9
5,411,860	+		PS417_24955	0.44	-0.0
5,411,860	+				+0.4
5,411,860	+		PS417_24955	0.44	+0.2
5,411,860	+		PS417_24955	0.44	+1.2
5,411,861	-		PS417_24955	0.44	-0.4
5,411,861	-		PS417_24955	0.44	-0.2
5,411,861	-		PS417_24955	0.44	+1.0
5,411,861	-		PS417_24955	0.44	+0.7
5,411,991	-				-1.5
5,412,073	+				+0.1
5,412,073	+				-0.2
5,412,074	-				-0.2
5,412,091	+				+2.3