Strain Fitness in Pseudomonas simiae WCS417 around PS417_24855

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24850 and PS417_24855 are separated by 370 nucleotidesPS417_24855 and PS417_24860 are separated by 111 nucleotidesPS417_24860 and PS417_24865 are separated by 91 nucleotides PS417_24850: PS417_24850 - transcriptional regulator, at 5,389,391 to 5,390,167 _24850 PS417_24855: PS417_24855 - integrase, at 5,390,538 to 5,391,752 _24855 PS417_24860: PS417_24860 - hypothetical protein, at 5,391,864 to 5,392,583 _24860 PS417_24865: PS417_24865 - hypothetical protein, at 5,392,675 to 5,393,712 _24865 Position (kb) 5390 5391 5392Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 5389.670 kb on + strand, within PS417_24850at 5389.671 kb on - strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.736 kb on - strand, within PS417_24850at 5389.736 kb on - strand, within PS417_24850at 5389.736 kb on - strand, within PS417_24850at 5389.814 kb on + strand, within PS417_24850at 5389.815 kb on - strand, within PS417_24850at 5389.815 kb on - strand, within PS417_24850at 5389.815 kb on - strandat 5389.943 kb on + strand, within PS417_24850at 5389.943 kb on + strand, within PS417_24850at 5389.944 kb on - strand, within PS417_24850at 5389.944 kb on - strand, within PS417_24850at 5389.944 kb on - strand, within PS417_24850at 5389.944 kb on - strand, within PS417_24850at 5389.950 kb on - strand, within PS417_24850at 5390.012 kb on + strand, within PS417_24850at 5390.013 kb on - strand, within PS417_24850at 5390.013 kb on - strand, within PS417_24850at 5390.021 kb on + strand, within PS417_24850at 5390.022 kb on - strand, within PS417_24850at 5390.022 kb on - strand, within PS417_24850at 5390.121 kb on + strandat 5390.121 kb on + strandat 5390.122 kb on - strandat 5390.122 kb on - strandat 5390.122 kb on - strandat 5390.174 kb on + strandat 5390.209 kb on - strandat 5390.219 kb on + strandat 5390.219 kb on + strandat 5390.267 kb on + strandat 5390.267 kb on + strandat 5390.267 kb on + strandat 5390.268 kb on - strandat 5390.268 kb on - strandat 5390.268 kb on - strandat 5390.371 kb on - strandat 5390.414 kb on - strandat 5390.414 kb on - strandat 5390.414 kb on - strandat 5390.418 kb on + strandat 5390.419 kb on - strandat 5390.419 kb on - strandat 5390.419 kb on - strandat 5390.419 kb on - strandat 5390.419 kb on - strandat 5390.419 kb on - strandat 5390.422 kb on + strandat 5390.543 kb on + strandat 5390.544 kb on - strandat 5390.589 kb on + strandat 5390.589 kb on + strandat 5390.589 kb on + strandat 5390.589 kb on + strandat 5390.589 kb on + strandat 5390.590 kb on - strandat 5390.590 kb on - strandat 5390.590 kb on - strandat 5390.590 kb on - strandat 5390.590 kb on - strandat 5390.791 kb on + strand, within PS417_24855at 5390.791 kb on + strand, within PS417_24855at 5390.791 kb on + strand, within PS417_24855at 5390.791 kb on + strandat 5390.792 kb on - strand, within PS417_24855at 5390.792 kb on - strand, within PS417_24855at 5390.792 kb on - strand, within PS417_24855at 5390.825 kb on - strand, within PS417_24855at 5390.825 kb on - strand, within PS417_24855at 5390.910 kb on - strand, within PS417_24855at 5390.937 kb on + strand, within PS417_24855at 5390.937 kb on + strand, within PS417_24855at 5390.937 kb on + strand, within PS417_24855at 5390.937 kb on + strand, within PS417_24855at 5390.938 kb on - strand, within PS417_24855at 5390.953 kb on + strand, within PS417_24855at 5390.954 kb on - strand, within PS417_24855at 5390.982 kb on - strand, within PS417_24855at 5391.012 kb on - strand, within PS417_24855at 5391.021 kb on - strand, within PS417_24855at 5391.046 kb on + strand, within PS417_24855at 5391.046 kb on + strand, within PS417_24855at 5391.046 kb on + strand, within PS417_24855at 5391.047 kb on - strand, within PS417_24855at 5391.047 kb on - strand, within PS417_24855at 5391.047 kb on - strand, within PS417_24855at 5391.080 kb on + strand, within PS417_24855at 5391.094 kb on + strand, within PS417_24855at 5391.094 kb on + strand, within PS417_24855at 5391.095 kb on - strand, within PS417_24855at 5391.134 kb on - strand, within PS417_24855at 5391.299 kb on + strand, within PS417_24855at 5391.299 kb on + strand, within PS417_24855at 5391.335 kb on - strand, within PS417_24855at 5391.461 kb on - strand, within PS417_24855at 5391.526 kb on + strand, within PS417_24855at 5391.526 kb on + strand, within PS417_24855at 5391.527 kb on - strand, within PS417_24855at 5391.527 kb on - strand, within PS417_24855at 5391.527 kb on - strand, within PS417_24855at 5391.542 kb on + strand, within PS417_24855at 5391.590 kb on + strand, within PS417_24855at 5391.591 kb on - strand, within PS417_24855at 5391.591 kb on - strandat 5391.591 kb on - strand, within PS417_24855at 5391.610 kb on + strand, within PS417_24855at 5391.610 kb on + strand, within PS417_24855at 5391.610 kb on + strand, within PS417_24855at 5391.611 kb on - strand, within PS417_24855at 5391.726 kb on - strandat 5391.733 kb on + strandat 5391.928 kb on + strandat 5391.953 kb on + strand, within PS417_24860at 5391.959 kb on + strand, within PS417_24860at 5392.019 kb on + strand, within PS417_24860at 5392.106 kb on - strand, within PS417_24860at 5392.136 kb on - strand, within PS417_24860at 5392.228 kb on - strand, within PS417_24860at 5392.415 kb on - strand, within PS417_24860at 5392.418 kb on + strand, within PS417_24860at 5392.419 kb on - strand, within PS417_24860at 5392.608 kb on - strandat 5392.625 kb on + strandat 5392.625 kb on + strandat 5392.626 kb on - strandat 5392.645 kb on + strandat 5392.671 kb on + strandat 5392.699 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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5,389,670 + PS417_24850 0.36 +1.0
5,389,671 - PS417_24850 0.36 -0.2
5,389,735 + PS417_24850 0.44 +0.2
5,389,735 + PS417_24850 0.44 +0.3
5,389,735 + PS417_24850 0.44 +0.1
5,389,735 + PS417_24850 0.44 -0.4
5,389,735 + PS417_24850 0.44 -0.4
5,389,735 + PS417_24850 0.44 -0.0
5,389,736 - PS417_24850 0.44 +0.1
5,389,736 - PS417_24850 0.44 -0.8
5,389,736 - PS417_24850 0.44 -0.3
5,389,814 + PS417_24850 0.54 -0.2
5,389,815 - PS417_24850 0.55 -0.9
5,389,815 - PS417_24850 0.55 -1.6
5,389,815 - -0.6
5,389,943 + PS417_24850 0.71 +0.7
5,389,943 + PS417_24850 0.71 +0.0
5,389,944 - PS417_24850 0.71 +0.4
5,389,944 - PS417_24850 0.71 -0.3
5,389,944 - PS417_24850 0.71 +0.9
5,389,944 - PS417_24850 0.71 +1.4
5,389,950 - PS417_24850 0.72 -2.7
5,390,012 + PS417_24850 0.80 -0.9
5,390,013 - PS417_24850 0.80 +0.0
5,390,013 - PS417_24850 0.80 -0.1
5,390,021 + PS417_24850 0.81 -1.4
5,390,022 - PS417_24850 0.81 +0.1
5,390,022 - PS417_24850 0.81 +0.1
5,390,121 + -1.2
5,390,121 + +2.0
5,390,122 - +0.9
5,390,122 - -0.2
5,390,122 - -0.4
5,390,174 + +2.2
5,390,209 - +10.3
5,390,219 + -0.6
5,390,219 + -0.4
5,390,267 + -1.2
5,390,267 + -1.2
5,390,267 + +1.4
5,390,268 - -2.2
5,390,268 - -0.5
5,390,268 - -2.0
5,390,371 - +0.2
5,390,414 - -1.4
5,390,414 - -0.2
5,390,414 - -0.6
5,390,418 + -0.5
5,390,419 - +0.8
5,390,419 - -0.3
5,390,419 - +0.7
5,390,419 - +1.1
5,390,419 - +0.6
5,390,419 - -0.2
5,390,422 + -2.3
5,390,543 + +0.0
5,390,544 - +2.0
5,390,589 + +0.2
5,390,589 + +0.5
5,390,589 + -0.4
5,390,589 + -0.3
5,390,589 + +0.7
5,390,590 - +0.3
5,390,590 - -0.4
5,390,590 - -1.9
5,390,590 - -0.6
5,390,590 - +2.0
5,390,791 + PS417_24855 0.21 -0.3
5,390,791 + PS417_24855 0.21 -0.0
5,390,791 + PS417_24855 0.21 -0.0
5,390,791 + -0.2
5,390,792 - PS417_24855 0.21 -0.1
5,390,792 - PS417_24855 0.21 +3.6
5,390,792 - PS417_24855 0.21 +0.4
5,390,825 - PS417_24855 0.24 +1.2
5,390,825 - PS417_24855 0.24 -0.4
5,390,910 - PS417_24855 0.31 -0.1
5,390,937 + PS417_24855 0.33 +1.0
5,390,937 + PS417_24855 0.33 +1.3
5,390,937 + PS417_24855 0.33 -0.1
5,390,937 + PS417_24855 0.33 +0.0
5,390,938 - PS417_24855 0.33 -0.4
5,390,953 + PS417_24855 0.34 -0.0
5,390,954 - PS417_24855 0.34 -1.2
5,390,982 - PS417_24855 0.37 +0.7
5,391,012 - PS417_24855 0.39 +0.2
5,391,021 - PS417_24855 0.40 -0.4
5,391,046 + PS417_24855 0.42 -0.4
5,391,046 + PS417_24855 0.42 +0.2
5,391,046 + PS417_24855 0.42 -0.6
5,391,047 - PS417_24855 0.42 -0.5
5,391,047 - PS417_24855 0.42 +0.2
5,391,047 - PS417_24855 0.42 +0.4
5,391,080 + PS417_24855 0.45 -0.1
5,391,094 + PS417_24855 0.46 +0.6
5,391,094 + PS417_24855 0.46 +0.2
5,391,095 - PS417_24855 0.46 +0.2
5,391,134 - PS417_24855 0.49 -0.2
5,391,299 + PS417_24855 0.63 +0.3
5,391,299 + PS417_24855 0.63 -0.7
5,391,335 - PS417_24855 0.66 -0.3
5,391,461 - PS417_24855 0.76 +1.5
5,391,526 + PS417_24855 0.81 -1.0
5,391,526 + PS417_24855 0.81 +0.1
5,391,527 - PS417_24855 0.81 +0.6
5,391,527 - PS417_24855 0.81 +0.4
5,391,527 - PS417_24855 0.81 -0.3
5,391,542 + PS417_24855 0.83 +0.8
5,391,590 + PS417_24855 0.87 -0.6
5,391,591 - PS417_24855 0.87 -0.2
5,391,591 - +0.4
5,391,591 - PS417_24855 0.87 +0.4
5,391,610 + PS417_24855 0.88 -0.2
5,391,610 + PS417_24855 0.88 +0.7
5,391,610 + PS417_24855 0.88 -0.3
5,391,611 - PS417_24855 0.88 +1.2
5,391,726 - +1.0
5,391,733 + -0.8
5,391,928 + -0.2
5,391,953 + PS417_24860 0.12 +0.3
5,391,959 + PS417_24860 0.13 -0.6
5,392,019 + PS417_24860 0.22 +0.5
5,392,106 - PS417_24860 0.34 -1.2
5,392,136 - PS417_24860 0.38 +0.1
5,392,228 - PS417_24860 0.51 +0.4
5,392,415 - PS417_24860 0.77 -0.1
5,392,418 + PS417_24860 0.77 +0.2
5,392,419 - PS417_24860 0.77 -0.0
5,392,608 - -1.4
5,392,625 + +1.4
5,392,625 + +0.4
5,392,626 - -0.7
5,392,645 + -0.2
5,392,671 + -1.2
5,392,699 - -2.4

Or see this region's nucleotide sequence