Strain Fitness in Pseudomonas simiae WCS417 around PS417_20210

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20205 and PS417_20210 are separated by 103 nucleotidesPS417_20210 and PS417_20215 overlap by 89 nucleotides PS417_20205: PS417_20205 - LysR family transcriptional regulator, at 4,389,661 to 4,390,554 _20205 PS417_20210: PS417_20210 - membrane protein, at 4,390,658 to 4,391,866 _20210 PS417_20215: PS417_20215 - nitrate reductase, at 4,391,778 to 4,393,220 _20215 Position (kb) 4390 4391 4392Strain fitness (log2 ratio) -2 -1 0 1 2at 4389.747 kb on + strandat 4389.902 kb on + strand, within PS417_20205at 4390.224 kb on - strand, within PS417_20205at 4390.265 kb on + strand, within PS417_20205at 4390.265 kb on + strand, within PS417_20205at 4390.266 kb on - strand, within PS417_20205at 4390.266 kb on - strand, within PS417_20205at 4390.266 kb on - strand, within PS417_20205at 4390.356 kb on - strand, within PS417_20205at 4390.421 kb on - strand, within PS417_20205at 4390.630 kb on + strandat 4390.638 kb on + strandat 4390.677 kb on + strandat 4390.678 kb on - strandat 4390.817 kb on + strand, within PS417_20210at 4390.902 kb on + strand, within PS417_20210at 4391.288 kb on + strand, within PS417_20210at 4391.288 kb on + strand, within PS417_20210at 4391.288 kb on + strand, within PS417_20210at 4391.288 kb on + strand, within PS417_20210at 4391.288 kb on + strand, within PS417_20210at 4391.288 kb on + strand, within PS417_20210at 4391.289 kb on - strand, within PS417_20210at 4391.289 kb on - strand, within PS417_20210at 4391.289 kb on - strand, within PS417_20210at 4391.289 kb on - strand, within PS417_20210at 4391.289 kb on - strand, within PS417_20210at 4391.289 kb on - strand, within PS417_20210at 4391.289 kb on - strand, within PS417_20210at 4391.297 kb on + strand, within PS417_20210at 4391.297 kb on + strand, within PS417_20210at 4391.297 kb on + strand, within PS417_20210at 4391.298 kb on - strand, within PS417_20210at 4391.298 kb on - strand, within PS417_20210at 4391.298 kb on - strand, within PS417_20210at 4391.309 kb on + strandat 4391.309 kb on + strandat 4391.310 kb on - strand, within PS417_20210at 4391.310 kb on - strand, within PS417_20210at 4391.310 kb on - strand, within PS417_20210at 4391.578 kb on + strand, within PS417_20210at 4391.579 kb on - strand, within PS417_20210at 4391.842 kb on - strandat 4391.842 kb on - strandat 4391.980 kb on + strand, within PS417_20215at 4392.110 kb on - strand, within PS417_20215at 4392.110 kb on - strand, within PS417_20215at 4392.317 kb on + strand, within PS417_20215at 4392.317 kb on + strand, within PS417_20215at 4392.464 kb on + strand, within PS417_20215at 4392.464 kb on + strand, within PS417_20215at 4392.465 kb on - strand, within PS417_20215at 4392.517 kb on + strand, within PS417_20215at 4392.518 kb on - strand, within PS417_20215at 4392.518 kb on - strand, within PS417_20215at 4392.684 kb on - strand, within PS417_20215at 4392.717 kb on + strand, within PS417_20215at 4392.718 kb on - strand, within PS417_20215at 4392.796 kb on + strand, within PS417_20215at 4392.796 kb on + strand, within PS417_20215at 4392.856 kb on + strand, within PS417_20215at 4392.856 kb on + strand, within PS417_20215at 4392.857 kb on - strand, within PS417_20215

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
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4,389,747 + +0.9
4,389,902 + PS417_20205 0.27 -0.9
4,390,224 - PS417_20205 0.63 +2.3
4,390,265 + PS417_20205 0.68 -0.9
4,390,265 + PS417_20205 0.68 -0.4
4,390,266 - PS417_20205 0.68 -0.9
4,390,266 - PS417_20205 0.68 +1.3
4,390,266 - PS417_20205 0.68 +0.0
4,390,356 - PS417_20205 0.78 -0.7
4,390,421 - PS417_20205 0.85 -0.3
4,390,630 + +1.4
4,390,638 + +0.2
4,390,677 + +1.9
4,390,678 - +0.1
4,390,817 + PS417_20210 0.13 -0.1
4,390,902 + PS417_20210 0.20 -0.5
4,391,288 + PS417_20210 0.52 -0.1
4,391,288 + PS417_20210 0.52 +0.3
4,391,288 + PS417_20210 0.52 -0.6
4,391,288 + PS417_20210 0.52 -0.1
4,391,288 + PS417_20210 0.52 +0.4
4,391,288 + PS417_20210 0.52 +0.5
4,391,289 - PS417_20210 0.52 +1.3
4,391,289 - PS417_20210 0.52 +0.9
4,391,289 - PS417_20210 0.52 +0.9
4,391,289 - PS417_20210 0.52 -0.7
4,391,289 - PS417_20210 0.52 -0.6
4,391,289 - PS417_20210 0.52 -0.4
4,391,289 - PS417_20210 0.52 -0.3
4,391,297 + PS417_20210 0.53 +0.6
4,391,297 + PS417_20210 0.53 +1.5
4,391,297 + PS417_20210 0.53 +2.0
4,391,298 - PS417_20210 0.53 +1.0
4,391,298 - PS417_20210 0.53 +2.2
4,391,298 - PS417_20210 0.53 -1.1
4,391,309 + +2.4
4,391,309 + -0.6
4,391,310 - PS417_20210 0.54 +0.2
4,391,310 - PS417_20210 0.54 +1.4
4,391,310 - PS417_20210 0.54 +1.5
4,391,578 + PS417_20210 0.76 -1.0
4,391,579 - PS417_20210 0.76 +1.4
4,391,842 - -1.3
4,391,842 - -0.3
4,391,980 + PS417_20215 0.14 +0.1
4,392,110 - PS417_20215 0.23 +0.1
4,392,110 - PS417_20215 0.23 +0.1
4,392,317 + PS417_20215 0.37 -0.4
4,392,317 + PS417_20215 0.37 -0.3
4,392,464 + PS417_20215 0.48 -0.6
4,392,464 + PS417_20215 0.48 +1.2
4,392,465 - PS417_20215 0.48 -0.5
4,392,517 + PS417_20215 0.51 -0.1
4,392,518 - PS417_20215 0.51 +0.7
4,392,518 - PS417_20215 0.51 +0.0
4,392,684 - PS417_20215 0.63 -0.0
4,392,717 + PS417_20215 0.65 +0.4
4,392,718 - PS417_20215 0.65 -1.4
4,392,796 + PS417_20215 0.71 -0.6
4,392,796 + PS417_20215 0.71 -1.8
4,392,856 + PS417_20215 0.75 -1.8
4,392,856 + PS417_20215 0.75 +2.4
4,392,857 - PS417_20215 0.75 -1.7

Or see this region's nucleotide sequence