Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18780 and PS417_18790 are separated by 180 nucleotides PS417_18790 and PS417_18795 are separated by 112 nucleotides PS417_18795 and PS417_18800 are separated by 53 nucleotides PS417_18800 and PS417_18805 are separated by 69 nucleotides
PS417_18780: PS417_18780 - flavin reductase, at 4,073,128 to 4,073,637
_18780
PS417_18790: PS417_18790 - amino acid transporter LysE, at 4,073,818 to 4,074,426
_18790
PS417_18795: PS417_18795 - LysR family transcriptional regulator, at 4,074,539 to 4,075,402
_18795
PS417_18800: PS417_18800 - hypothetical protein, at 4,075,456 to 4,075,818
_18800
PS417_18805: PS417_18805 - hypothetical protein, at 4,075,888 to 4,077,135
_18805
Position (kb) 4074
4075
4076 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4073.749 kb on - strand at 4073.749 kb on - strand at 4073.874 kb on + strand at 4073.874 kb on + strand at 4073.875 kb on - strand at 4073.940 kb on - strand, within PS417_18790 at 4073.940 kb on - strand, within PS417_18790 at 4073.966 kb on + strand, within PS417_18790 at 4073.966 kb on + strand, within PS417_18790 at 4073.966 kb on + strand, within PS417_18790 at 4073.967 kb on - strand, within PS417_18790 at 4073.967 kb on - strand, within PS417_18790 at 4073.967 kb on - strand, within PS417_18790 at 4074.301 kb on - strand, within PS417_18790 at 4074.401 kb on + strand at 4074.401 kb on + strand at 4074.402 kb on - strand at 4074.402 kb on - strand at 4074.402 kb on - strand at 4074.526 kb on - strand at 4074.848 kb on + strand, within PS417_18795 at 4074.849 kb on - strand, within PS417_18795 at 4074.849 kb on - strand, within PS417_18795 at 4074.849 kb on - strand, within PS417_18795 at 4074.849 kb on - strand, within PS417_18795 at 4074.849 kb on - strand, within PS417_18795 at 4075.170 kb on - strand, within PS417_18795 at 4075.170 kb on - strand, within PS417_18795 at 4075.235 kb on - strand, within PS417_18795 at 4075.321 kb on - strand at 4075.372 kb on + strand at 4075.422 kb on - strand at 4075.721 kb on + strand, within PS417_18800 at 4075.722 kb on - strand, within PS417_18800 at 4076.050 kb on + strand, within PS417_18805 at 4076.051 kb on - strand, within PS417_18805 at 4076.171 kb on - strand, within PS417_18805 at 4076.209 kb on + strand, within PS417_18805 at 4076.212 kb on + strand, within PS417_18805 at 4076.212 kb on + strand, within PS417_18805 at 4076.212 kb on + strand, within PS417_18805 at 4076.213 kb on - strand, within PS417_18805 at 4076.315 kb on - strand, within PS417_18805
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,073,749 - +0.1 4,073,749 - -0.7 4,073,874 + +0.7 4,073,874 + -1.1 4,073,875 - +0.9 4,073,940 - PS417_18790 0.20 +0.8 4,073,940 - PS417_18790 0.20 +0.4 4,073,966 + PS417_18790 0.24 -0.7 4,073,966 + PS417_18790 0.24 -2.4 4,073,966 + PS417_18790 0.24 +0.8 4,073,967 - PS417_18790 0.24 -0.9 4,073,967 - PS417_18790 0.24 +0.3 4,073,967 - PS417_18790 0.24 +0.4 4,074,301 - PS417_18790 0.79 +0.5 4,074,401 + +1.4 4,074,401 + +1.8 4,074,402 - +2.5 4,074,402 - +0.1 4,074,402 - +1.4 4,074,526 - +3.2 4,074,848 + PS417_18795 0.36 +1.4 4,074,849 - PS417_18795 0.36 -1.2 4,074,849 - PS417_18795 0.36 +0.6 4,074,849 - PS417_18795 0.36 -0.2 4,074,849 - PS417_18795 0.36 -0.7 4,074,849 - PS417_18795 0.36 -0.1 4,075,170 - PS417_18795 0.73 -0.3 4,075,170 - PS417_18795 0.73 +0.1 4,075,235 - PS417_18795 0.81 -2.3 4,075,321 - -0.5 4,075,372 + -0.3 4,075,422 - +0.8 4,075,721 + PS417_18800 0.73 +0.3 4,075,722 - PS417_18800 0.73 +2.3 4,076,050 + PS417_18805 0.13 +0.5 4,076,051 - PS417_18805 0.13 -1.0 4,076,171 - PS417_18805 0.23 +0.4 4,076,209 + PS417_18805 0.26 -1.4 4,076,212 + PS417_18805 0.26 +0.1 4,076,212 + PS417_18805 0.26 -0.7 4,076,212 + PS417_18805 0.26 +0.1 4,076,213 - PS417_18805 0.26 +0.2 4,076,315 - PS417_18805 0.34 -1.5
Or see this region's nucleotide sequence