Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01795 and PS417_01800 are separated by 186 nucleotides PS417_01800 and PS417_01805 are separated by 219 nucleotides
PS417_01795: PS417_01795 - glucosyltransferase MdoH, at 399,275 to 401,845
_01795
PS417_01800: PS417_01800 - amino acid ABC transporter substrate-binding protein, at 402,032 to 402,832
_01800
PS417_01805: PS417_01805 - amino acid ABC transporter substrate-binding protein, at 403,052 to 403,849
_01805
Position (kb) 402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 401.173 kb on - strand, within PS417_01795 at 401.450 kb on + strand, within PS417_01795 at 401.486 kb on + strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.895 kb on + strand at 402.006 kb on + strand at 402.045 kb on - strand at 402.063 kb on + strand at 402.063 kb on + strand at 402.161 kb on + strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.614 kb on + strand, within PS417_01800 at 402.728 kb on - strand, within PS417_01800 at 402.773 kb on + strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.839 kb on + strand at 402.848 kb on - strand at 402.929 kb on + strand at 402.930 kb on - strand at 402.930 kb on - strand at 402.930 kb on - strand at 403.025 kb on + strand at 403.025 kb on + strand at 403.026 kb on - strand at 403.026 kb on - strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.028 kb on - strand at 403.178 kb on + strand, within PS417_01805 at 403.179 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.551 kb on - strand at 403.551 kb on - strand, within PS417_01805 at 403.590 kb on + strand, within PS417_01805 at 403.591 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.638 kb on + strand, within PS417_01805 at 403.639 kb on - strand, within PS417_01805 at 403.677 kb on - strand, within PS417_01805 at 403.734 kb on - strand, within PS417_01805 at 403.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 401,173 - PS417_01795 0.74 +1.2 401,450 + PS417_01795 0.85 -1.7 401,486 + PS417_01795 0.86 +0.4 401,487 - PS417_01795 0.86 +1.2 401,487 - PS417_01795 0.86 +1.0 401,487 - PS417_01795 0.86 +1.4 401,487 - PS417_01795 0.86 -0.7 401,895 + +0.9 402,006 + +0.4 402,045 - -0.6 402,063 + -1.2 402,063 + -0.8 402,161 + PS417_01800 0.16 -0.1 402,162 - PS417_01800 0.16 +0.0 402,162 - PS417_01800 0.16 +0.1 402,162 - PS417_01800 0.16 +0.7 402,162 - PS417_01800 0.16 +0.4 402,162 - PS417_01800 0.16 +0.8 402,162 - +1.0 402,598 + PS417_01800 0.71 +0.6 402,598 + PS417_01800 0.71 +0.8 402,598 + PS417_01800 0.71 +1.0 402,614 + PS417_01800 0.73 +1.1 402,728 - PS417_01800 0.87 +1.1 402,773 + +0.2 402,774 - -0.3 402,774 - +0.2 402,774 - +0.8 402,774 - -0.3 402,839 + -0.0 402,848 - +0.4 402,929 + -0.2 402,930 - -1.4 402,930 - -0.3 402,930 - +0.4 403,025 + -1.6 403,025 + +0.9 403,026 - +0.9 403,026 - -0.1 403,027 + -1.3 403,027 + +0.2 403,027 + -1.6 403,027 + -0.4 403,028 - +1.4 403,178 + PS417_01805 0.16 +0.5 403,179 - PS417_01805 0.16 +0.2 403,458 - PS417_01805 0.51 -1.9 403,458 - PS417_01805 0.51 -3.2 403,458 - PS417_01805 0.51 +1.1 403,458 - PS417_01805 0.51 -1.3 403,458 - PS417_01805 0.51 +0.4 403,458 - PS417_01805 0.51 -0.6 403,460 - PS417_01805 0.51 -0.7 403,460 - PS417_01805 0.51 -0.0 403,460 - PS417_01805 0.51 -2.5 403,460 - PS417_01805 0.51 -0.1 403,550 + PS417_01805 0.62 +0.7 403,550 + PS417_01805 0.62 -0.9 403,551 - +1.4 403,551 - PS417_01805 0.63 -0.2 403,590 + PS417_01805 0.67 -1.6 403,591 - PS417_01805 0.68 -0.3 403,632 - PS417_01805 0.73 -0.2 403,632 - PS417_01805 0.73 +0.2 403,632 - PS417_01805 0.73 -2.3 403,638 + PS417_01805 0.73 +3.4 403,639 - PS417_01805 0.74 +0.7 403,677 - PS417_01805 0.78 -0.3 403,734 - PS417_01805 0.85 -0.2 403,790 + -0.7
Or see this region's nucleotide sequence