Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11350 and PS417_11355 are separated by 11 nucleotides PS417_11355 and PS417_11360 are separated by 3 nucleotides PS417_11360 and PS417_11365 are separated by 42 nucleotides
PS417_11350: PS417_11350 - biopolymer transporter ExbB, at 2,444,914 to 2,446,713
_11350
PS417_11355: PS417_11355 - biopolymer transporter ExbD, at 2,446,725 to 2,447,150
_11355
PS417_11360: PS417_11360 - energy transducer TonB, at 2,447,154 to 2,447,858
_11360
PS417_11365: PS417_11365 - membrane protein, at 2,447,901 to 2,449,601
_11365
Position (kb) 2446
2447
2448 Strain fitness (log2 ratio) -2
-1
0
1 at 2446.169 kb on - strand, within PS417_11350 at 2447.038 kb on + strand at 2447.039 kb on - strand, within PS417_11355 at 2447.596 kb on - strand, within PS417_11360 at 2447.598 kb on - strand, within PS417_11360 at 2447.619 kb on + strand, within PS417_11360 at 2447.896 kb on + strand at 2447.897 kb on - strand at 2447.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 2,446,169 - PS417_11350 0.70 -1.8 2,447,038 + +0.4 2,447,039 - PS417_11355 0.74 +0.9 2,447,596 - PS417_11360 0.63 +0.5 2,447,598 - PS417_11360 0.63 -1.4 2,447,619 + PS417_11360 0.66 +0.8 2,447,896 + -1.1 2,447,897 - +0.2 2,447,897 - -0.2
Or see this region's nucleotide sequence