Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01075 and PS417_01080 overlap by 1 nucleotides PS417_01080 and PS417_01085 are separated by 24 nucleotides
PS417_01075: PS417_01075 - N5,N10-methylene tetrahydromethanopterin reductase, at 235,175 to 236,527
_01075
PS417_01080: PS417_01080 - acyl-CoA dehydrogenase, at 236,527 to 237,720
_01080
PS417_01085: PS417_01085 - monooxygenase, at 237,745 to 238,986
_01085
Position (kb) 236
237
238 Strain fitness (log2 ratio) -1
0
1
2 at 235.533 kb on + strand, within PS417_01075 at 235.557 kb on + strand, within PS417_01075 at 235.621 kb on - strand, within PS417_01075 at 235.621 kb on - strand, within PS417_01075 at 235.908 kb on + strand, within PS417_01075 at 235.957 kb on - strand, within PS417_01075 at 236.020 kb on - strand, within PS417_01075 at 236.020 kb on - strand, within PS417_01075 at 236.031 kb on - strand, within PS417_01075 at 236.031 kb on - strand, within PS417_01075 at 236.031 kb on - strand, within PS417_01075 at 236.188 kb on - strand, within PS417_01075 at 236.199 kb on + strand, within PS417_01075 at 236.200 kb on - strand, within PS417_01075 at 236.428 kb on - strand at 236.428 kb on - strand at 236.568 kb on - strand at 236.570 kb on + strand at 236.570 kb on + strand at 236.571 kb on - strand at 236.588 kb on + strand at 236.589 kb on - strand at 237.031 kb on - strand, within PS417_01080 at 237.031 kb on - strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.236 kb on + strand, within PS417_01080 at 237.254 kb on + strand, within PS417_01080 at 237.438 kb on - strand, within PS417_01080 at 237.838 kb on + strand at 238.103 kb on + strand, within PS417_01085 at 238.103 kb on + strand, within PS417_01085 at 238.103 kb on + strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.104 kb on - strand, within PS417_01085 at 238.163 kb on - strand, within PS417_01085 at 238.429 kb on + strand at 238.475 kb on + strand, within PS417_01085 at 238.475 kb on + strand, within PS417_01085 at 238.499 kb on + strand, within PS417_01085 at 238.499 kb on + strand at 238.499 kb on + strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085 at 238.500 kb on - strand, within PS417_01085
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 235,533 + PS417_01075 0.26 -1.1 235,557 + PS417_01075 0.28 +1.3 235,621 - PS417_01075 0.33 +0.8 235,621 - PS417_01075 0.33 -0.4 235,908 + PS417_01075 0.54 -0.9 235,957 - PS417_01075 0.58 -0.7 236,020 - PS417_01075 0.62 -1.2 236,020 - PS417_01075 0.62 -0.6 236,031 - PS417_01075 0.63 +1.6 236,031 - PS417_01075 0.63 +2.4 236,031 - PS417_01075 0.63 -0.7 236,188 - PS417_01075 0.75 -0.5 236,199 + PS417_01075 0.76 +1.4 236,200 - PS417_01075 0.76 +0.8 236,428 - -0.9 236,428 - +0.1 236,568 - -0.4 236,570 + +1.4 236,570 + -0.5 236,571 - +0.3 236,588 + -0.2 236,589 - -0.4 237,031 - PS417_01080 0.42 +0.3 237,031 - PS417_01080 0.42 -0.0 237,236 + PS417_01080 0.59 +1.4 237,236 + PS417_01080 0.59 +1.2 237,236 + PS417_01080 0.59 -0.8 237,254 + PS417_01080 0.61 +1.6 237,438 - PS417_01080 0.76 +0.4 237,838 + +0.1 238,103 + PS417_01085 0.29 -0.9 238,103 + PS417_01085 0.29 +0.3 238,103 + PS417_01085 0.29 +0.9 238,104 - PS417_01085 0.29 -0.8 238,104 - PS417_01085 0.29 +1.2 238,104 - PS417_01085 0.29 -1.1 238,104 - PS417_01085 0.29 +1.4 238,163 - PS417_01085 0.34 -0.3 238,429 + +1.4 238,475 + PS417_01085 0.59 -0.3 238,475 + PS417_01085 0.59 -1.0 238,499 + PS417_01085 0.61 -0.0 238,499 + +0.4 238,499 + PS417_01085 0.61 -0.3 238,500 - PS417_01085 0.61 -0.5 238,500 - PS417_01085 0.61 -0.8
Or see this region's nucleotide sequence