Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24370 and PS417_24375 are separated by 96 nucleotides PS417_24375 and PS417_24380 are separated by 173 nucleotides PS417_24380 and PS417_24385 overlap by 4 nucleotides
PS417_24370: PS417_24370 - (2Fe-2S)-binding protein, at 5,290,401 to 5,290,907
_24370
PS417_24375: PS417_24375 - hypothetical protein, at 5,291,004 to 5,291,450
_24375
PS417_24380: PS417_24380 - guanine permease, at 5,291,624 to 5,292,919
_24380
PS417_24385: PS417_24385 - tRNA (uracil-5-)-methyltransferase, at 5,292,916 to 5,293,995
_24385
Position (kb) 5291
5292
5293 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5290.854 kb on + strand, within PS417_24370 at 5290.893 kb on - strand at 5290.908 kb on - strand at 5290.929 kb on - strand at 5291.012 kb on + strand at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.107 kb on + strand, within PS417_24375 at 5291.108 kb on - strand, within PS417_24375 at 5291.108 kb on - strand, within PS417_24375 at 5291.114 kb on - strand, within PS417_24375 at 5291.286 kb on - strand, within PS417_24375 at 5291.424 kb on + strand at 5291.485 kb on + strand at 5291.486 kb on - strand at 5291.511 kb on - strand at 5291.714 kb on + strand at 5291.714 kb on + strand at 5291.714 kb on + strand at 5291.715 kb on - strand at 5291.715 kb on - strand at 5291.883 kb on - strand, within PS417_24380 at 5291.909 kb on - strand, within PS417_24380 at 5292.481 kb on + strand, within PS417_24380 at 5292.482 kb on - strand, within PS417_24380 at 5292.530 kb on + strand, within PS417_24380 at 5292.531 kb on - strand, within PS417_24380 at 5292.971 kb on + strand at 5292.971 kb on + strand at 5293.393 kb on + strand, within PS417_24385 at 5293.394 kb on - strand, within PS417_24385 at 5293.504 kb on + strand, within PS417_24385 at 5293.807 kb on - strand, within PS417_24385 at 5293.807 kb on - strand, within PS417_24385 at 5293.855 kb on + strand, within PS417_24385 at 5293.855 kb on + strand, within PS417_24385 at 5293.855 kb on + strand, within PS417_24385 at 5293.856 kb on - strand, within PS417_24385 at 5293.856 kb on - strand, within PS417_24385
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,290,854 + PS417_24370 0.89 +1.9 5,290,893 - -0.8 5,290,908 - +0.3 5,290,929 - -0.0 5,291,012 + +0.1 5,291,107 + PS417_24375 0.23 -0.4 5,291,107 + PS417_24375 0.23 -0.8 5,291,107 + PS417_24375 0.23 +0.9 5,291,107 + PS417_24375 0.23 -0.4 5,291,107 + PS417_24375 0.23 -0.3 5,291,107 + PS417_24375 0.23 +1.5 5,291,107 + PS417_24375 0.23 -0.7 5,291,107 + PS417_24375 0.23 +1.3 5,291,107 + PS417_24375 0.23 -0.8 5,291,107 + PS417_24375 0.23 -2.7 5,291,108 - PS417_24375 0.23 +0.3 5,291,108 - PS417_24375 0.23 -0.1 5,291,114 - PS417_24375 0.25 -0.6 5,291,286 - PS417_24375 0.63 +2.2 5,291,424 + +0.0 5,291,485 + -0.2 5,291,486 - -1.7 5,291,511 - +0.6 5,291,714 + +0.5 5,291,714 + -0.5 5,291,714 + -0.1 5,291,715 - -0.9 5,291,715 - -1.5 5,291,883 - PS417_24380 0.20 -0.7 5,291,909 - PS417_24380 0.22 -1.0 5,292,481 + PS417_24380 0.66 -0.4 5,292,482 - PS417_24380 0.66 +2.5 5,292,530 + PS417_24380 0.70 -1.8 5,292,531 - PS417_24380 0.70 +0.6 5,292,971 + -1.6 5,292,971 + +1.8 5,293,393 + PS417_24385 0.44 -2.5 5,293,394 - PS417_24385 0.44 +0.3 5,293,504 + PS417_24385 0.54 -0.8 5,293,807 - PS417_24385 0.82 -1.0 5,293,807 - PS417_24385 0.82 -0.4 5,293,855 + PS417_24385 0.87 +0.5 5,293,855 + PS417_24385 0.87 -0.2 5,293,855 + PS417_24385 0.87 +0.2 5,293,856 - PS417_24385 0.87 +0.3 5,293,856 - PS417_24385 0.87 -1.4
Or see this region's nucleotide sequence