Strain Fitness in Pseudomonas simiae WCS417 around PS417_01680

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01675 and PS417_01680 are separated by 200 nucleotidesPS417_01680 and PS417_01685 overlap by 1 nucleotides PS417_01675: PS417_01675 - maltodextrin phosphorylase, at 368,200 to 370,650 _01675 PS417_01680: PS417_01680 - membrane protein, at 370,851 to 373,922 _01680 PS417_01685: PS417_01685 - membrane protein, at 373,922 to 375,277 _01685 Position (kb) 370 371 372 373 374Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 369.865 kb on - strand, within PS417_01675at 369.875 kb on - strand, within PS417_01675at 370.099 kb on + strand, within PS417_01675at 370.284 kb on + strand, within PS417_01675at 370.668 kb on - strandat 370.668 kb on - strandat 370.729 kb on + strandat 370.804 kb on + strandat 370.804 kb on + strandat 370.804 kb on + strandat 370.805 kb on - strandat 370.805 kb on - strandat 370.807 kb on + strandat 370.807 kb on + strandat 370.808 kb on - strandat 370.808 kb on - strandat 370.808 kb on - strandat 370.838 kb on - strandat 371.484 kb on - strand, within PS417_01680at 371.526 kb on + strandat 371.527 kb on - strand, within PS417_01680at 371.733 kb on + strand, within PS417_01680at 371.733 kb on + strand, within PS417_01680at 371.734 kb on - strandat 371.853 kb on + strand, within PS417_01680at 371.910 kb on + strand, within PS417_01680at 371.910 kb on + strand, within PS417_01680at 371.910 kb on + strand, within PS417_01680at 371.911 kb on - strand, within PS417_01680at 371.943 kb on - strand, within PS417_01680at 372.021 kb on + strand, within PS417_01680at 372.021 kb on + strand, within PS417_01680at 372.021 kb on + strand, within PS417_01680at 372.021 kb on + strand, within PS417_01680at 372.021 kb on + strand, within PS417_01680at 372.040 kb on + strand, within PS417_01680at 372.040 kb on + strand, within PS417_01680at 372.041 kb on - strand, within PS417_01680at 372.086 kb on - strand, within PS417_01680at 372.138 kb on + strand, within PS417_01680at 372.139 kb on - strand, within PS417_01680at 372.139 kb on - strand, within PS417_01680at 372.139 kb on - strand, within PS417_01680at 372.195 kb on + strand, within PS417_01680at 372.307 kb on + strand, within PS417_01680at 372.308 kb on - strand, within PS417_01680at 372.343 kb on + strand, within PS417_01680at 372.343 kb on + strand, within PS417_01680at 372.472 kb on + strand, within PS417_01680at 372.472 kb on + strand, within PS417_01680at 372.472 kb on + strand, within PS417_01680at 372.473 kb on - strand, within PS417_01680at 373.033 kb on - strand, within PS417_01680at 373.033 kb on - strand, within PS417_01680at 373.151 kb on - strand, within PS417_01680at 373.269 kb on + strand, within PS417_01680at 373.428 kb on + strand, within PS417_01680at 373.429 kb on - strand, within PS417_01680at 373.429 kb on - strand, within PS417_01680at 373.486 kb on - strand, within PS417_01680at 373.869 kb on + strandat 373.870 kb on - strandat 374.048 kb on - strandat 374.142 kb on - strand, within PS417_01685at 374.142 kb on - strand, within PS417_01685at 374.214 kb on - strand, within PS417_01685

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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369,865 - PS417_01675 0.68 -0.9
369,875 - PS417_01675 0.68 +0.1
370,099 + PS417_01675 0.77 -0.1
370,284 + PS417_01675 0.85 -2.1
370,668 - -0.3
370,668 - -0.2
370,729 + +0.8
370,804 + -0.6
370,804 + -0.1
370,804 + +0.3
370,805 - -0.6
370,805 - +0.8
370,807 + -0.3
370,807 + -0.2
370,808 - +0.1
370,808 - +0.7
370,808 - +0.2
370,838 - +0.2
371,484 - PS417_01680 0.21 +0.5
371,526 + -1.1
371,527 - PS417_01680 0.22 -0.5
371,733 + PS417_01680 0.29 +3.5
371,733 + PS417_01680 0.29 -0.1
371,734 - +0.5
371,853 + PS417_01680 0.33 -0.8
371,910 + PS417_01680 0.34 +0.7
371,910 + PS417_01680 0.34 +0.2
371,910 + PS417_01680 0.34 +0.4
371,911 - PS417_01680 0.35 +0.5
371,943 - PS417_01680 0.36 -0.8
372,021 + PS417_01680 0.38 +0.2
372,021 + PS417_01680 0.38 -1.9
372,021 + PS417_01680 0.38 +0.5
372,021 + PS417_01680 0.38 -0.5
372,021 + PS417_01680 0.38 +1.5
372,040 + PS417_01680 0.39 -0.5
372,040 + PS417_01680 0.39 -0.7
372,041 - PS417_01680 0.39 +0.4
372,086 - PS417_01680 0.40 -1.7
372,138 + PS417_01680 0.42 -2.1
372,139 - PS417_01680 0.42 +0.2
372,139 - PS417_01680 0.42 -0.3
372,139 - PS417_01680 0.42 +0.2
372,195 + PS417_01680 0.44 +0.3
372,307 + PS417_01680 0.47 -0.7
372,308 - PS417_01680 0.47 +2.2
372,343 + PS417_01680 0.49 -0.6
372,343 + PS417_01680 0.49 -0.2
372,472 + PS417_01680 0.53 -0.3
372,472 + PS417_01680 0.53 -2.3
372,472 + PS417_01680 0.53 -0.3
372,473 - PS417_01680 0.53 -0.1
373,033 - PS417_01680 0.71 +2.2
373,033 - PS417_01680 0.71 +0.5
373,151 - PS417_01680 0.75 +3.6
373,269 + PS417_01680 0.79 +0.1
373,428 + PS417_01680 0.84 -0.5
373,429 - PS417_01680 0.84 -0.4
373,429 - PS417_01680 0.84 -0.1
373,486 - PS417_01680 0.86 -0.1
373,869 + -1.6
373,870 - -0.3
374,048 - +0.6
374,142 - PS417_01685 0.16 -2.3
374,142 - PS417_01685 0.16 +2.9
374,214 - PS417_01685 0.22 +4.4

Or see this region's nucleotide sequence