Strain Fitness in Pseudomonas simiae WCS417 around PS417_01550

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01545 and PS417_01550 overlap by 4 nucleotidesPS417_01550 and PS417_01555 are separated by 325 nucleotides PS417_01545: PS417_01545 - adenine glycosylase, at 340,665 to 341,732 _01545 PS417_01550: PS417_01550 - cell envelope biogenesis protein AsmA, at 341,729 to 343,939 _01550 PS417_01555: PS417_01555 - MFS transporter, at 344,265 to 345,926 _01555 Position (kb) 341 342 343 344Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 340.760 kb on + strandat 340.760 kb on + strandat 340.762 kb on + strandat 340.763 kb on - strandat 340.763 kb on - strandat 340.763 kb on - strandat 341.485 kb on + strand, within PS417_01545at 341.485 kb on + strand, within PS417_01545at 341.486 kb on - strand, within PS417_01545at 341.486 kb on - strand, within PS417_01545at 341.514 kb on + strand, within PS417_01545at 341.514 kb on + strand, within PS417_01545at 341.581 kb on + strand, within PS417_01545at 341.582 kb on - strand, within PS417_01545at 341.693 kb on - strandat 341.986 kb on + strand, within PS417_01550at 342.225 kb on - strand, within PS417_01550at 342.225 kb on - strand, within PS417_01550at 342.462 kb on + strand, within PS417_01550at 342.462 kb on + strand, within PS417_01550at 342.463 kb on - strand, within PS417_01550at 342.763 kb on - strand, within PS417_01550at 342.763 kb on - strand, within PS417_01550at 343.076 kb on + strand, within PS417_01550at 343.411 kb on - strand, within PS417_01550at 343.608 kb on - strand, within PS417_01550at 343.613 kb on + strand, within PS417_01550at 343.834 kb on + strandat 343.834 kb on + strandat 343.835 kb on - strandat 343.835 kb on - strandat 343.835 kb on - strandat 343.837 kb on - strandat 343.837 kb on - strandat 343.837 kb on - strandat 343.837 kb on - strandat 343.874 kb on + strandat 343.875 kb on - strandat 343.907 kb on + strandat 343.908 kb on - strandat 343.953 kb on + strandat 343.954 kb on - strandat 343.954 kb on - strandat 343.982 kb on + strandat 343.982 kb on + strandat 343.983 kb on - strandat 343.983 kb on - strandat 343.983 kb on - strandat 343.984 kb on + strandat 344.020 kb on - strandat 344.027 kb on - strandat 344.089 kb on - strandat 344.122 kb on - strandat 344.122 kb on - strandat 344.167 kb on - strandat 344.242 kb on - strandat 344.242 kb on - strandat 344.242 kb on - strandat 344.245 kb on - strandat 344.406 kb on + strandat 344.547 kb on + strand, within PS417_01555at 344.547 kb on + strand, within PS417_01555at 344.547 kb on + strand, within PS417_01555at 344.547 kb on + strand, within PS417_01555at 344.548 kb on - strand, within PS417_01555at 344.548 kb on - strand, within PS417_01555at 344.548 kb on - strand, within PS417_01555at 344.548 kb on - strand, within PS417_01555at 344.548 kb on - strand, within PS417_01555at 344.548 kb on - strand, within PS417_01555at 344.621 kb on + strand, within PS417_01555at 344.621 kb on + strand, within PS417_01555at 344.621 kb on + strand, within PS417_01555at 344.621 kb on + strand, within PS417_01555at 344.622 kb on - strand, within PS417_01555at 344.682 kb on - strand, within PS417_01555at 344.685 kb on + strandat 344.685 kb on + strand, within PS417_01555at 344.685 kb on + strand, within PS417_01555at 344.685 kb on + strand, within PS417_01555at 344.686 kb on - strand, within PS417_01555at 344.736 kb on - strand, within PS417_01555at 344.754 kb on + strand, within PS417_01555at 344.756 kb on + strand, within PS417_01555at 344.756 kb on + strand, within PS417_01555at 344.756 kb on + strand, within PS417_01555at 344.756 kb on + strand, within PS417_01555at 344.757 kb on - strand, within PS417_01555

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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340,760 + -1.9
340,760 + -1.1
340,762 + +0.5
340,763 - +1.3
340,763 - -3.2
340,763 - +0.1
341,485 + PS417_01545 0.77 -0.2
341,485 + PS417_01545 0.77 +0.7
341,486 - PS417_01545 0.77 -1.3
341,486 - PS417_01545 0.77 -0.1
341,514 + PS417_01545 0.79 -1.1
341,514 + PS417_01545 0.79 -0.2
341,581 + PS417_01545 0.86 +2.3
341,582 - PS417_01545 0.86 +0.2
341,693 - -0.6
341,986 + PS417_01550 0.12 +0.2
342,225 - PS417_01550 0.22 -1.3
342,225 - PS417_01550 0.22 +4.3
342,462 + PS417_01550 0.33 -1.6
342,462 + PS417_01550 0.33 -2.9
342,463 - PS417_01550 0.33 +0.5
342,763 - PS417_01550 0.47 -1.5
342,763 - PS417_01550 0.47 -0.8
343,076 + PS417_01550 0.61 -1.8
343,411 - PS417_01550 0.76 -1.5
343,608 - PS417_01550 0.85 -2.5
343,613 + PS417_01550 0.85 -0.1
343,834 + +1.1
343,834 + -2.1
343,835 - -0.4
343,835 - +2.5
343,835 - -0.6
343,837 - -1.7
343,837 - +1.0
343,837 - -1.2
343,837 - +1.1
343,874 + -2.7
343,875 - -1.1
343,907 + +0.4
343,908 - +0.5
343,953 + -2.8
343,954 - +0.0
343,954 - -2.3
343,982 + +0.7
343,982 + -1.2
343,983 - -0.5
343,983 - +0.7
343,983 - -0.4
343,984 + -0.8
344,020 - +0.5
344,027 - +2.2
344,089 - +0.0
344,122 - +0.8
344,122 - -1.6
344,167 - -0.5
344,242 - -0.5
344,242 - +2.1
344,242 - -1.8
344,245 - +1.5
344,406 + -0.4
344,547 + PS417_01555 0.17 -0.8
344,547 + PS417_01555 0.17 +0.1
344,547 + PS417_01555 0.17 -0.9
344,547 + PS417_01555 0.17 -0.1
344,548 - PS417_01555 0.17 -1.0
344,548 - PS417_01555 0.17 +1.5
344,548 - PS417_01555 0.17 +0.4
344,548 - PS417_01555 0.17 -0.2
344,548 - PS417_01555 0.17 -1.9
344,548 - PS417_01555 0.17 -0.1
344,621 + PS417_01555 0.21 +2.2
344,621 + PS417_01555 0.21 -0.8
344,621 + PS417_01555 0.21 +1.2
344,621 + PS417_01555 0.21 +0.5
344,622 - PS417_01555 0.21 +0.0
344,682 - PS417_01555 0.25 -0.7
344,685 + -0.1
344,685 + PS417_01555 0.25 -0.7
344,685 + PS417_01555 0.25 +0.9
344,685 + PS417_01555 0.25 -1.1
344,686 - PS417_01555 0.25 -0.3
344,736 - PS417_01555 0.28 +0.5
344,754 + PS417_01555 0.29 +0.7
344,756 + PS417_01555 0.30 -0.5
344,756 + PS417_01555 0.30 +0.5
344,756 + PS417_01555 0.30 -0.3
344,756 + PS417_01555 0.30 +0.9
344,757 - PS417_01555 0.30 +0.2

Or see this region's nucleotide sequence