Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01275 and PS417_01280 are separated by 132 nucleotides PS417_01280 and PS417_01285 are separated by 141 nucleotides PS417_01285 and PS417_01290 are separated by 87 nucleotides
PS417_01275: PS417_01275 - LysR family transcriptional regulator, at 277,883 to 278,770
_01275
PS417_01280: PS417_01280 - peptidoglycan-binding protein LysM, at 278,903 to 279,343
_01280
PS417_01285: PS417_01285 - haloacid dehalogenase, at 279,485 to 280,147
_01285
PS417_01290: PS417_01290 - ADP-ribose diphosphatase, at 280,235 to 280,801
_01290
Position (kb) 278
279
280 Strain fitness (log2 ratio) -1
0
1
2 at 278.266 kb on - strand, within PS417_01275 at 278.318 kb on - strand at 278.335 kb on - strand, within PS417_01275 at 278.448 kb on - strand, within PS417_01275 at 278.448 kb on - strand, within PS417_01275 at 278.548 kb on - strand, within PS417_01275 at 278.808 kb on + strand at 278.902 kb on + strand at 278.902 kb on + strand at 278.903 kb on - strand at 278.908 kb on + strand at 279.159 kb on + strand, within PS417_01280 at 279.223 kb on + strand, within PS417_01280 at 279.258 kb on - strand, within PS417_01280 at 279.258 kb on - strand, within PS417_01280 at 279.342 kb on - strand at 279.420 kb on - strand at 279.511 kb on - strand at 279.949 kb on - strand, within PS417_01285 at 279.971 kb on - strand, within PS417_01285 at 280.162 kb on + strand at 280.162 kb on + strand at 280.162 kb on + strand at 280.163 kb on - strand at 280.166 kb on + strand at 280.166 kb on + strand at 280.167 kb on - strand at 280.167 kb on - strand at 280.203 kb on + strand at 280.205 kb on + strand at 280.206 kb on - strand at 280.206 kb on - strand at 280.269 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 278,266 - PS417_01275 0.43 -1.2 278,318 - +1.5 278,335 - PS417_01275 0.51 -1.5 278,448 - PS417_01275 0.64 -1.0 278,448 - PS417_01275 0.64 -0.3 278,548 - PS417_01275 0.75 +0.0 278,808 + +1.8 278,902 + +0.5 278,902 + +1.0 278,903 - +0.5 278,908 + +0.3 279,159 + PS417_01280 0.58 -0.9 279,223 + PS417_01280 0.73 +0.5 279,258 - PS417_01280 0.80 -0.8 279,258 - PS417_01280 0.80 -0.8 279,342 - -0.6 279,420 - +0.7 279,511 - -0.3 279,949 - PS417_01285 0.70 -0.1 279,971 - PS417_01285 0.73 -0.2 280,162 + +0.5 280,162 + -0.2 280,162 + +0.2 280,163 - +0.9 280,166 + -0.8 280,166 + +0.5 280,167 - -1.7 280,167 - +1.5 280,203 + -0.4 280,205 + -1.0 280,206 - -0.9 280,206 - +2.5 280,269 + -0.6
Or see this region's nucleotide sequence