Strain Fitness in Pseudomonas simiae WCS417 around PS417_06955

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06950 and PS417_06955 are separated by 204 nucleotidesPS417_06955 and PS417_06960 are separated by 55 nucleotidesPS417_06960 and PS417_06965 are separated by 84 nucleotides PS417_06950: PS417_06950 - LysR family transcriptional regulator, at 1,537,756 to 1,538,682 _06950 PS417_06955: PS417_06955 - membrane protein, at 1,538,887 to 1,539,414 _06955 PS417_06960: PS417_06960 - membrane protein, at 1,539,470 to 1,539,895 _06960 PS417_06965: PS417_06965 - cysteine methyltransferase, at 1,539,980 to 1,540,480 _06965 Position (kb) 1538 1539 1540Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1538.090 kb on - strand, within PS417_06950at 1538.285 kb on - strand, within PS417_06950at 1538.344 kb on + strand, within PS417_06950at 1538.344 kb on + strand, within PS417_06950at 1538.345 kb on - strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strandat 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.363 kb on + strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.364 kb on - strand, within PS417_06950at 1538.465 kb on + strand, within PS417_06950at 1538.466 kb on - strand, within PS417_06950at 1538.660 kb on + strandat 1539.070 kb on + strand, within PS417_06955at 1539.070 kb on + strand, within PS417_06955at 1539.070 kb on + strand, within PS417_06955at 1539.070 kb on + strand, within PS417_06955at 1539.230 kb on - strand, within PS417_06955at 1539.302 kb on + strand, within PS417_06955at 1539.386 kb on - strandat 1539.390 kb on + strandat 1539.426 kb on + strandat 1539.653 kb on + strand, within PS417_06960at 1539.653 kb on + strand, within PS417_06960at 1539.653 kb on + strand, within PS417_06960at 1539.654 kb on - strand, within PS417_06960at 1539.654 kb on - strand, within PS417_06960at 1539.654 kb on - strand, within PS417_06960at 1539.674 kb on - strand, within PS417_06960at 1539.751 kb on + strand, within PS417_06960at 1539.752 kb on - strand, within PS417_06960at 1539.752 kb on - strand, within PS417_06960at 1539.752 kb on - strand, within PS417_06960at 1539.962 kb on + strandat 1540.299 kb on + strand, within PS417_06965at 1540.299 kb on + strand, within PS417_06965at 1540.353 kb on + strand, within PS417_06965at 1540.354 kb on - strand, within PS417_06965

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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1,538,090 - PS417_06950 0.36 +0.4
1,538,285 - PS417_06950 0.57 -2.4
1,538,344 + PS417_06950 0.63 +0.7
1,538,344 + PS417_06950 0.63 +0.1
1,538,345 - PS417_06950 0.64 +1.2
1,538,363 + PS417_06950 0.65 +0.9
1,538,363 + PS417_06950 0.65 +0.5
1,538,363 + PS417_06950 0.65 -0.2
1,538,363 + -1.1
1,538,363 + PS417_06950 0.65 +0.8
1,538,363 + PS417_06950 0.65 -0.1
1,538,363 + PS417_06950 0.65 -0.4
1,538,364 - PS417_06950 0.66 +0.4
1,538,364 - PS417_06950 0.66 -0.8
1,538,364 - PS417_06950 0.66 -1.0
1,538,364 - PS417_06950 0.66 -1.6
1,538,364 - PS417_06950 0.66 +0.2
1,538,364 - PS417_06950 0.66 -0.4
1,538,465 + PS417_06950 0.76 -0.0
1,538,466 - PS417_06950 0.77 -0.3
1,538,660 + +0.5
1,539,070 + PS417_06955 0.35 +1.0
1,539,070 + PS417_06955 0.35 -1.0
1,539,070 + PS417_06955 0.35 +2.5
1,539,070 + PS417_06955 0.35 -2.4
1,539,230 - PS417_06955 0.65 -1.0
1,539,302 + PS417_06955 0.79 -1.3
1,539,386 - +2.5
1,539,390 + +1.3
1,539,426 + +0.4
1,539,653 + PS417_06960 0.43 +1.8
1,539,653 + PS417_06960 0.43 +0.5
1,539,653 + PS417_06960 0.43 -1.2
1,539,654 - PS417_06960 0.43 -1.8
1,539,654 - PS417_06960 0.43 -0.3
1,539,654 - PS417_06960 0.43 +0.4
1,539,674 - PS417_06960 0.48 -0.6
1,539,751 + PS417_06960 0.66 +0.9
1,539,752 - PS417_06960 0.66 +0.2
1,539,752 - PS417_06960 0.66 +4.7
1,539,752 - PS417_06960 0.66 +2.3
1,539,962 + -0.5
1,540,299 + PS417_06965 0.64 +0.0
1,540,299 + PS417_06965 0.64 -2.1
1,540,353 + PS417_06965 0.74 +0.5
1,540,354 - PS417_06965 0.75 +0.1

Or see this region's nucleotide sequence