Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27645 and PS417_27650 are separated by 3 nucleotides PS417_27650 and PS417_27655 are separated by 177 nucleotides
PS417_27645: PS417_27645 - membrane protein, at 5,960,656 to 5,961,570
_27645
PS417_27650: PS417_27650 - chemotaxis protein, at 5,961,574 to 5,963,550
_27650
PS417_27655: PS417_27655 - LysR family transcriptional regulator, at 5,963,728 to 5,964,648
_27655
Position (kb) 5961
5962
5963
5964 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5960.635 kb on + strand at 5960.635 kb on + strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.749 kb on + strand, within PS417_27645 at 5960.879 kb on - strand, within PS417_27645 at 5960.879 kb on - strand, within PS417_27645 at 5960.957 kb on - strand, within PS417_27645 at 5961.301 kb on + strand, within PS417_27645 at 5961.355 kb on + strand, within PS417_27645 at 5961.445 kb on + strand, within PS417_27645 at 5961.445 kb on + strand, within PS417_27645 at 5961.446 kb on - strand, within PS417_27645 at 5961.446 kb on - strand, within PS417_27645 at 5961.460 kb on + strand, within PS417_27645 at 5961.460 kb on + strand, within PS417_27645 at 5961.461 kb on - strand, within PS417_27645 at 5961.569 kb on - strand at 5961.847 kb on + strand, within PS417_27650 at 5961.847 kb on + strand, within PS417_27650 at 5961.848 kb on - strand, within PS417_27650 at 5961.848 kb on - strand, within PS417_27650 at 5961.848 kb on - strand, within PS417_27650 at 5962.299 kb on + strand, within PS417_27650 at 5962.299 kb on + strand, within PS417_27650 at 5962.300 kb on - strand, within PS417_27650 at 5962.300 kb on - strand, within PS417_27650 at 5962.334 kb on + strand at 5962.334 kb on + strand, within PS417_27650 at 5962.334 kb on + strand, within PS417_27650 at 5962.334 kb on + strand, within PS417_27650 at 5962.334 kb on + strand, within PS417_27650 at 5962.335 kb on - strand, within PS417_27650 at 5962.493 kb on - strand, within PS417_27650 at 5962.989 kb on - strand at 5963.001 kb on - strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.033 kb on + strand, within PS417_27650 at 5963.034 kb on - strand, within PS417_27650 at 5963.244 kb on - strand, within PS417_27650 at 5963.469 kb on + strand at 5963.515 kb on + strand at 5963.516 kb on - strand at 5963.840 kb on + strand, within PS417_27655 at 5963.840 kb on + strand, within PS417_27655 at 5963.843 kb on + strand, within PS417_27655 at 5963.844 kb on - strand, within PS417_27655 at 5964.163 kb on + strand, within PS417_27655 at 5964.163 kb on + strand at 5964.163 kb on + strand, within PS417_27655 at 5964.163 kb on + strand, within PS417_27655 at 5964.167 kb on + strand, within PS417_27655 at 5964.167 kb on + strand, within PS417_27655 at 5964.168 kb on - strand, within PS417_27655 at 5964.201 kb on - strand, within PS417_27655 at 5964.393 kb on + strand, within PS417_27655
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,960,635 + -0.9 5,960,635 + +0.1 5,960,636 - +1.0 5,960,636 - -1.0 5,960,636 - -0.0 5,960,636 - +0.6 5,960,749 + PS417_27645 0.10 +0.8 5,960,879 - PS417_27645 0.24 -1.2 5,960,879 - PS417_27645 0.24 -1.0 5,960,957 - PS417_27645 0.33 -0.3 5,961,301 + PS417_27645 0.70 -0.6 5,961,355 + PS417_27645 0.76 +2.0 5,961,445 + PS417_27645 0.86 +1.2 5,961,445 + PS417_27645 0.86 -1.2 5,961,446 - PS417_27645 0.86 +1.3 5,961,446 - PS417_27645 0.86 -0.7 5,961,460 + PS417_27645 0.88 +0.6 5,961,460 + PS417_27645 0.88 -0.8 5,961,461 - PS417_27645 0.88 -0.4 5,961,569 - -0.4 5,961,847 + PS417_27650 0.14 +0.8 5,961,847 + PS417_27650 0.14 +0.7 5,961,848 - PS417_27650 0.14 +0.5 5,961,848 - PS417_27650 0.14 -0.5 5,961,848 - PS417_27650 0.14 -0.9 5,962,299 + PS417_27650 0.37 +0.7 5,962,299 + PS417_27650 0.37 +1.5 5,962,300 - PS417_27650 0.37 +0.2 5,962,300 - PS417_27650 0.37 -0.5 5,962,334 + +0.7 5,962,334 + PS417_27650 0.38 -1.6 5,962,334 + PS417_27650 0.38 -0.6 5,962,334 + PS417_27650 0.38 -0.4 5,962,334 + PS417_27650 0.38 -0.5 5,962,335 - PS417_27650 0.38 +1.3 5,962,493 - PS417_27650 0.46 -0.6 5,962,989 - +0.1 5,963,001 - PS417_27650 0.72 -0.2 5,963,033 + PS417_27650 0.74 -0.5 5,963,033 + PS417_27650 0.74 +2.2 5,963,033 + PS417_27650 0.74 +0.3 5,963,033 + PS417_27650 0.74 -2.2 5,963,033 + PS417_27650 0.74 -1.6 5,963,033 + PS417_27650 0.74 -0.4 5,963,034 - PS417_27650 0.74 -0.5 5,963,244 - PS417_27650 0.84 +2.0 5,963,469 + +0.7 5,963,515 + +1.0 5,963,516 - -0.1 5,963,840 + PS417_27655 0.12 -1.1 5,963,840 + PS417_27655 0.12 +3.0 5,963,843 + PS417_27655 0.12 +0.6 5,963,844 - PS417_27655 0.13 -0.4 5,964,163 + PS417_27655 0.47 -1.1 5,964,163 + +1.7 5,964,163 + PS417_27655 0.47 +0.4 5,964,163 + PS417_27655 0.47 +0.7 5,964,167 + PS417_27655 0.48 -0.8 5,964,167 + PS417_27655 0.48 -0.7 5,964,168 - PS417_27655 0.48 -1.6 5,964,201 - PS417_27655 0.51 +1.7 5,964,393 + PS417_27655 0.72 -0.4
Or see this region's nucleotide sequence