Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00245 and PS417_00250 overlap by 4 nucleotides PS417_00250 and PS417_00255 are separated by 35 nucleotides PS417_00255 and PS417_00260 are separated by 194 nucleotides PS417_00260 and PS417_00265 are separated by 2 nucleotides
PS417_00245: PS417_00245 - oligopeptidase A, at 47,179 to 49,230
_00245
PS417_00250: PS417_00250 - DNA-binding protein, at 49,227 to 49,502
_00250
PS417_00255: PS417_00255 - hypothetical protein, at 49,538 to 49,741
_00255
PS417_00260: PS417_00260 - gluconate 2-dehydrogenase, at 49,936 to 50,688
_00260
PS417_00265: PS417_00265 - GMC family oxidoreductase, at 50,691 to 52,475
_00265
Position (kb) 49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 48.693 kb on + strand, within PS417_00245 at 48.949 kb on + strand, within PS417_00245 at 48.950 kb on - strand, within PS417_00245 at 49.009 kb on + strand, within PS417_00245 at 49.009 kb on + strand, within PS417_00245 at 49.009 kb on + strand, within PS417_00245 at 49.010 kb on - strand, within PS417_00245 at 49.010 kb on - strand, within PS417_00245 at 49.010 kb on - strand, within PS417_00245 at 49.010 kb on - strand, within PS417_00245 at 49.015 kb on + strand, within PS417_00245 at 49.016 kb on - strand, within PS417_00245 at 49.016 kb on - strand, within PS417_00245 at 49.017 kb on + strand, within PS417_00245 at 49.017 kb on + strand, within PS417_00245 at 49.017 kb on + strand, within PS417_00245 at 49.017 kb on + strand, within PS417_00245 at 49.017 kb on + strand, within PS417_00245 at 49.017 kb on + strand, within PS417_00245 at 49.017 kb on + strand at 49.017 kb on + strand, within PS417_00245 at 49.017 kb on + strand, within PS417_00245 at 49.018 kb on - strand, within PS417_00245 at 49.018 kb on - strand, within PS417_00245 at 49.018 kb on - strand, within PS417_00245 at 49.018 kb on - strand, within PS417_00245 at 49.018 kb on - strand, within PS417_00245 at 49.247 kb on + strand at 49.250 kb on + strand at 49.500 kb on + strand at 49.539 kb on + strand at 49.540 kb on - strand at 49.540 kb on - strand at 49.800 kb on + strand at 49.839 kb on + strand at 49.840 kb on - strand at 49.840 kb on - strand at 49.840 kb on - strand at 49.891 kb on + strand at 49.892 kb on - strand at 49.892 kb on - strand at 50.104 kb on + strand, within PS417_00260 at 50.104 kb on + strand, within PS417_00260 at 50.105 kb on - strand, within PS417_00260 at 50.219 kb on - strand, within PS417_00260 at 50.219 kb on - strand, within PS417_00260 at 50.436 kb on - strand, within PS417_00260 at 50.436 kb on - strand, within PS417_00260 at 50.436 kb on - strand, within PS417_00260 at 50.436 kb on - strand, within PS417_00260 at 50.436 kb on - strand, within PS417_00260 at 50.436 kb on - strand, within PS417_00260 at 50.436 kb on - strand, within PS417_00260 at 50.687 kb on - strand at 50.687 kb on - strand at 50.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 48,693 + PS417_00245 0.74 +1.5 48,949 + PS417_00245 0.86 -0.9 48,950 - PS417_00245 0.86 -0.7 49,009 + PS417_00245 0.89 -0.7 49,009 + PS417_00245 0.89 -0.8 49,009 + PS417_00245 0.89 -0.1 49,010 - PS417_00245 0.89 -0.2 49,010 - PS417_00245 0.89 -0.9 49,010 - PS417_00245 0.89 +0.3 49,010 - PS417_00245 0.89 -0.5 49,015 + PS417_00245 0.89 +1.3 49,016 - PS417_00245 0.90 +0.2 49,016 - PS417_00245 0.90 -1.1 49,017 + PS417_00245 0.90 -0.5 49,017 + PS417_00245 0.90 -0.3 49,017 + PS417_00245 0.90 +0.1 49,017 + PS417_00245 0.90 -1.4 49,017 + PS417_00245 0.90 -0.8 49,017 + PS417_00245 0.90 -1.2 49,017 + +1.6 49,017 + PS417_00245 0.90 -1.0 49,017 + PS417_00245 0.90 -0.6 49,018 - PS417_00245 0.90 +0.7 49,018 - PS417_00245 0.90 -1.4 49,018 - PS417_00245 0.90 -0.0 49,018 - PS417_00245 0.90 -0.3 49,018 - PS417_00245 0.90 -0.2 49,247 + -0.4 49,250 + -0.2 49,500 + -0.1 49,539 + +0.6 49,540 - -1.4 49,540 - -1.7 49,800 + -1.7 49,839 + -0.9 49,840 - -0.4 49,840 - -0.4 49,840 - -0.9 49,891 + -0.3 49,892 - +0.3 49,892 - -0.6 50,104 + PS417_00260 0.22 -0.0 50,104 + PS417_00260 0.22 -1.1 50,105 - PS417_00260 0.22 -0.4 50,219 - PS417_00260 0.38 -1.2 50,219 - PS417_00260 0.38 -2.9 50,436 - PS417_00260 0.66 +0.3 50,436 - PS417_00260 0.66 -0.7 50,436 - PS417_00260 0.66 -0.3 50,436 - PS417_00260 0.66 -0.5 50,436 - PS417_00260 0.66 -0.4 50,436 - PS417_00260 0.66 -0.6 50,436 - PS417_00260 0.66 -0.4 50,687 - -0.8 50,687 - -0.4 50,729 - -0.7
Or see this region's nucleotide sequence